PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011087571.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 353aa MW: 39788.6 Da PI: 7.6791

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011087571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.8e-06	166	185	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r nL+ H+ XP_011087571.1 166 FSCHLCSKTFNRYNNLQMHM 185 89*****************9 PP
2	zf-C2H2	15.5	5e-05	250	272	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ XP_011087571.1 250 FMCRKCGKPFAVKGDWRTHEKNC 272 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	6.8E-6	38	48	No hit	No description
SuperFamily	SSF57667	1.59E-5	159	188	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.8E-4	165	188	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.38	166	188	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.679	166	193	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	168	188	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.33E-6	234	270	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.6E-5	237	270	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	72	250	270	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	180	276	299	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MRDPPPPPPH YNFSTAAAGW FNFIPLHSHY SSVPPPNPPP PPPPPPPPKE PLPLLNTLSL 60 TLTTKELHLI HQHPSCTSTT STSDENVSIA LQIGLPLTPT SADLHHHPSS SSSSSRVSTY 120 ASAAGSESMV EKEGVDILSG LPLNRFNMGQ YWIPTPSQIL IGPTQFSCHL CSKTFNRYNN 180 LQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAAGCK HNIEHPRARP LKDFRTLQTH 240 YKRKHGAKPF MCRKCGKPFA VKGDWRTHEK NCGKIWYCFC GSDFKHKRSL KDHIKAFGHG 300 HGYRHHAHNN YDTYNYNHDH LDEEDEEEEE STSEIFDLHN GDHDDQDNPS PMS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MRDPPPPPPH YNFSTAAAGW FNFIPLHSHY SSVPPPNPPP PPPPPPPPKE PLPLLNTLSL  60
TLTTKELHLI HQHPSCTSTT STSDENVSIA LQIGLPLTPT SADLHHHPSS SSSSSRVSTY  120
ASAAGSESMV EKEGVDILSG LPLNRFNMGQ YWIPTPSQIL IGPTQFSCHL CSKTFNRYNN  180
LQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAAGCK HNIEHPRARP LKDFRTLQTH  240
YKRKHGAKPF MCRKCGKPFA VKGDWRTHEK NCGKIWYCFC GSDFKHKRSL KDHIKAFGHG  300
HGYRHHAHNN YDTYNYNHDH LDEEDEEEEE STSEIFDLHN GDHDDQDNPS PMS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011087571.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ044636	2e-97	KJ044636.1 Sesamum indicum clone TilSSR_15837 microsatellite Sesame_15837 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087571.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-111	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2G9HMK7	1e-132	A0A2G9HMK7_9LAMI; C2H2-type Zn-finger protein
STRING	Migut.B01315.1.p	1e-126	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-107	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]