PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084390.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 305aa    MW: 33139.1 Da    PI: 8.5668
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014125147123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C+ C+++F++   L  H  +H
  XP_011084390.1 125 YACKTCDRVFPSFQALGGHRASH 147
                     89**********99999998887 PP
2zf-C2H214.20.00013204226123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_011084390.1 204 HECSYCGAEFTSGQALGGHMRRH 226
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.4E-12125149IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951125152IPR007087Zinc finger, C2H2
SuperFamilySSF576675.06E-8125147No hitNo description
SMARTSM003550.13125147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576675.06E-8199226No hitNo description
Gene3DG3DSA:3.30.160.604.0E-4202228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-12204228IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429204231IPR007087Zinc finger, C2H2
SMARTSM003550.0098204226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEAVEQVLEP PCSQNKLDIS AVAKGKRTKR HRPHSPIPFT VTPPPTIAGE YGTTASPGFS  60
TASEEESTTT EEEDTARCLI LLSQGYISSN NKNDDVRNFQ HFKQSANPTA TAAVATEKVS  120
GACQYACKTC DRVFPSFQAL GGHRASHRKP KNEKKSAFFS DEEDLPSPST LSSKRKLPPN  180
PLSLQLNNIS GAGVPKPSPS LRIHECSYCG AEFTSGQALG GHMRRHRGGP ISPSSNPQPA  240
SKYFIEVPEP AERKKPRIGL SLDLNLPAPD VDENQRFAGF ATRQQKSPEK LVLSTTTPTL  300
VDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084390.10.0zinc finger protein ZAT5
TrEMBLA0A2Z7AK202e-66A0A2Z7AK20_9LAMI; Uncharacterized protein
STRINGMigut.F01919.1.p4e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-40C2H2 family protein