PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ARF | ||||||||
Protein Properties | Length: 937aa MW: 103531 Da PI: 5.5052 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.9 | 2.2e-24 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F ++++ XP_011083507.1 147 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFI--RDEK 238 99*********************999*****9555554.49************************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++v+r XP_011083507.1 239 SQLLLGVRRV 248 7789999985 PP | |||||||
2 | Auxin_resp | 118.7 | 4.7e-39 | 273 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k+++ +++s+GmRf m+fete+ss+rr++Gt++g+sdldp+rWpnSkWrsL+ XP_011083507.1 273 AAHAAASRSPFTIFYNPRACPSEFVIPFAKYRKTVYgTQLSIGMRFGMMFETEESSKRRYMGTITGISDLDPLRWPNSKWRSLQ 356 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.19E-47 | 134 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-41 | 140 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.44E-22 | 146 | 247 | No hit | No description |
SMART | SM01019 | 2.4E-23 | 147 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.028 | 147 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-22 | 147 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.8E-34 | 273 | 356 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.1E-9 | 818 | 906 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.556 | 820 | 903 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.99E-9 | 833 | 898 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 937 aa Download sequence Send to blast |
MASVEEKLKP GGLVVSGSHN LLEGMKLLKE MQDHNGVRKQ INSELWHACA GPLVTLPQVG 60 SLVYYFPQGH SEQVAVSTNR TATAQIPNYP NLPPQLLCQV HNVTLHADKD TDEIYAQMSL 120 QPVNSEKDVI PIPDFGLKPS KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPQLDYSM 180 QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSMFV GAKRLRAGDS VLFIRDEKSQ 240 LLLGVRRVNR QQAALPSSVL SADSMHIGIL AAAAHAAASR SPFTIFYNPR ACPSEFVIPF 300 AKYRKTVYGT QLSIGMRFGM MFETEESSKR RYMGTITGIS DLDPLRWPNS KWRSLQVEWD 360 EPGCGDKRNR VSPWEIETPE SLFIFPSLTA NLKRPFHSAF IGAQTEWDTL INRPFLRVPD 420 SSPGDFQCPS IPSLWSDQLM KMLVKPQRVI SPGNIAPPMQ EAKDAARQEA TSLMQSAVKQ 480 KPELITPDGF PQGEIHHITN SGILLPGKPA QTDKLENQTS SGTSSELTKV EPVLASDQLS 540 HFQTQGQCNE EKLPVKPTNP HNLINDFAGM DQNNGPLPLQ TSGWISQSRL DSHSIQTQQI 600 DPSQVETASA NALLQCPGQV EFSSYSPMYS SPSGSFRNPG SLTMIKKSDQ PSTTSCTAYT 660 VLPSVGQELW DSQFNDAKCV SQADLPILLP HQNFQYGSCG LKDLSDENHN QSDIYSCLNL 720 DGSNSGSTVI DPSVSSIVLD DFCTIKNADF HSPSDYLVGN FCSNQDVQSQ ITSVSLADSQ 780 TFSLQEYADN SGGASSSNVD FDDNNLLQHT SWQQVTPRFR TYTKIQKAGS VGRSIDVSSF 840 KTYDELRFAI ERMFGLEGLL NDLASGWKLV YVDFENDVLL VGDDPWEEFV GCVKCIRILS 900 PSEVQQMGEE GMQLLNSVGQ GVKGLTSEVG CDRDGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 381 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083507.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083507.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A191T8S8 | 0.0 | A0A191T8S8_SALMI; Auxin response factor | ||||
STRING | XP_009778804.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5859 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |