PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011077260.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 330aa MW: 35855 Da PI: 8.9855

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011077260.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.0004	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H XP_011077260.1 142 YTCKTCNRSFPSFQALGGHRASH 164 9***********99999998887 PP
2	zf-C2H2	14	0.00015	225	247	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_011077260.1 225 HECSYCGAEFTSGQALGGHMRKH 247 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.8E-12	141	166	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.35E-8	141	164	No hit	No description
PROSITE profile	PS50157	10.429	142	169	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.048	142	164	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	144	164	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.35E-8	220	247	No hit	No description
Pfam	PF13912	3.2E-12	225	249	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.785	225	247	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0084	225	247	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	227	247	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEAVEDVAAP PGRNNKDLSP IAKGKRTKRH RPHSPIPFTI KPPPGDNAPT AAVDEQQLLR 60 RSPTFSAVSS EESTTTEEVD TARCLILLSR GYFSAHPSNY HHDENQPKQN NSSRWYAGAA 120 TYSTAPAYGG PHKVAGSSAC VYTCKTCNRS FPSFQALGGH RASHKKPKNE KKTSAAFSDE 180 EDFPSPTMSS SKSRIPYHSL SLQLSNISST TFSAAPKSLA SPRIHECSYC GAEFTSGQAL 240 GGHMRKHRAG PIIRSSNVPP DTYIEELEPH HLKKPRIGLS LDLNLPAPED ENQKLGLGSK 300 QQKSPEEKKE TGTGLGLTTT TAPQLIDCHY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011077260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077260.1	0.0	zinc finger protein ZAT5
TrEMBL	A0A2Z7AK20	5e-70	A0A2Z7AK20_9LAMI; Uncharacterized protein
STRING	Migut.F01919.1.p	4e-85	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-48	C2H2 family protein