PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943520.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 408aa    MW: 44771.9 Da    PI: 8.4306
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943520.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11229274454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N +f+ Lr llP+       K +Ka++L+ + +Y++ L
  XP_010943520.1 229 HHVMSERRRREKLNGSFQDLRMLLPPG-----SKKDKASVLTSTRNYLNTL 274
                     58999********************95.....599************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.64E-13224278No hitNo description
SuperFamilySSF474591.96E-15225292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.735225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-14229292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9230274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDYSTLYQAA VFMGCKNGEI ELGISTLSNV NFVQQPQLEE FFSDEQSRPS SSSSSVLPSF  60
SGGSPEYSSL LNNKVYSSFI PDPSKELITK LAAQPSPAIN LPPRQVAMQA HSQHPSVQFP  120
AVLLDDDAVI TRAMMAVISS SSSSSSSYSS SPSIISQTVQ QARHHQAHGD QLGPFKPYNL  180
ALAPKLEPKN GSCGQKMIKK SISILKRINL LSAEARAKEP RATSSNQLHH VMSERRRREK  240
LNGSFQDLRM LLPPGSKKDK ASVLTSTRNY LNTLKAQIYE LKEKNQKLEM QLLSSDEAQE  300
TTGSSSGSVE VQIVKASDLS TELQHINVGL TVKAAGDIIA PLLHVLECLK EMGLSSLLSV  360
DAYTYNSSRM NQFARVDMKL QIKESDWNEE LFKEAMVMAV GRITTTSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238ERRRRE
2234239RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019706024.10.0putative transcription factor bHLH041 isoform X1
RefseqXP_029119196.10.0putative transcription factor bHLH041 isoform X2
TrEMBLA0A2H3YEX10.0A0A2H3YEX1_PHODC; putative transcription factor bHLH041 isoform X3
STRINGXP_008797772.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.18e-26bHLH family protein