PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942229.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 282aa    MW: 32149.2 Da    PI: 11.1519
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942229.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19141041100
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffkvl++s+  +   l +p kf+ +h  +g+    ++ t+ ++ g+ W v+l  ++ + ++++++GW++Fvka+gL +g f+vF+++g++ f  +
  XP_010942229.1  14 FFKVLLQSSFKT---LLIPPKFT-QHlvNGD---RQKATIVSPLGKFWHVNL--QREGHKMFFGSGWEDFVKAHGLSVGHFLVFRYQGNMVF--T 97 
                     889997766665...79*****9.5546444...3479999***********..999999********************************..9 PP

                     EEEE-SS CS
              B3  94 vkvfrks 100
                     +k+f+ks
  XP_010942229.1  98 IKIFDKS 104
                     ***9985 PP
2B357.52.6e-18187274699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++ +++ s r+++p+ f+ ++g+   +  ++tl d++ r+W v +    +s++  l++GW+ F kan+LkegD+++Fkl++  ++ ++v+++r+
  XP_010942229.1 187 VRRSSFISMRMSVPRVFCLSNGLT--TLYEITLIDQKQRQWPVLF--LPGSRGGHLGRGWRFFSKANNLKEGDTCIFKLVS--KKVMRVRIVRR 274
                     4566777889***********999..5679***************..888888779**********************986..55568888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-259106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.52211104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.92E-2511106IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-2012102No hitNo description
PfamPF023623.7E-1714103IPR003340B3 DNA binding domain
SMARTSM010199.4E-2014104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-19177273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-20178274IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-14181273No hitNo description
PROSITE profilePS5086313.874182275IPR003340B3 DNA binding domain
SMARTSM010191.9E-16183275IPR003340B3 DNA binding domain
PfamPF023621.0E-15186274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAAERSQGAH EPEFFKVLLQ SSFKTLLIPP KFTQHLVNGD RQKATIVSPL GKFWHVNLQR  60
EGHKMFFGSG WEDFVKAHGL SVGHFLVFRY QGNMVFTIKI FDKSGCLKEY DSIASTHVTK  120
REVDVDVEIL DVAPKDIEPV NWTSSSKKGR SKKSASTNSH GQRDIRKSSG SKRPNSRNRV  180
PYFERIVRRS SFISMRMSVP RVFCLSNGLT TLYEITLIDQ KQRQWPVLFL PGSRGGHLGR  240
GWRFFSKANN LKEGDTCIFK LVSKKVMRVR IVRRGILGSS KS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942229.10.0putative B3 domain-containing protein Os06g0632500
TrEMBLA0A2H3YF611e-111A0A2H3YF61_PHODC; putative B3 domain-containing protein Os06g0632500
STRINGXP_008797610.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-20B3 family protein