PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940744.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 384aa    MW: 42390.5 Da    PI: 8.6228
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940744.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.51.5e-1740120272
        trihelix   2 WtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     Wt +e+l Li+a+r ++er   g           +++++W++v ++++  g+ rs++qC++kw+nl ++ykk+++ e + t
  XP_010940744.1  40 WTLHETLILITAKRLDDERRAGGGssasggaaprSAEQRWKWVENYCWNNGCLRSQNQCNDKWDNLLRDYKKVRNYEARAT 120
                     **************77777775422445566666****************************************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9832106IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.6E-534108IPR009057Homeodomain-like
PfamPF138372.7E-1139118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDHVRALQHR PLRTSGASPP PPPPSPSSAA LARDYRKGNW TLHETLILIT AKRLDDERRA  60
GGGSSASGGA APRSAEQRWK WVENYCWNNG CLRSQNQCND KWDNLLRDYK KVRNYEARAT  120
ATAGGGTAGD RPSYWAMERH ERKERNLPTN LAAEVFEALT DVLSRRAARR GGAGAAVSTP  180
GSSRALPPPP APPPPPALTP PSQPQPPAPP FPLPTLLEMT ETSGSSENEG LEPEAKRRRL  240
RRLGSSVERS ATVLARTLLA CEEKREQRHR EMVELEERRL RLEEERTEMR RQGFAGLISA  300
VNNLSGAIHA LVSDHRNGDG RQISMKDDDA GTGEVLEKVG VEEEKESPGD DVEIALKKEV  360
AGRAWMVRDP DLDQQAAIRI WTLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235239KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029124456.10.0uncharacterized protein LOC105059202
TrEMBLA0A2H3ZHQ71e-131A0A2H3ZHQ7_PHODC; atherin-like
STRINGXP_008813702.11e-132(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.17e-38Trihelix family protein