PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940535.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 291aa    MW: 31093.8 Da    PI: 7.179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940535.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074128150123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k+F++   L  H  +H
  XP_010940535.1 128 YECKTCNKCFPSFQALGGHRASH 150
                     99**********99999998887 PP
2zf-C2H213.70.00018205227123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  XP_010940535.1 205 HECSICGSEFSSGQALGGHMRRH 227
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.0E-9127150No hitNo description
PfamPF139129.7E-12127152IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221128155IPR007087Zinc finger, C2H2
SMARTSM003550.082128150IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
SuperFamilySSF576674.0E-9200227No hitNo description
PROSITE profilePS501579.764205227IPR007087Zinc finger, C2H2
PfamPF139121.0E-11205229IPR007087Zinc finger, C2H2
SMARTSM003550.02205227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVTPEEAMVS DNSTNSNSDC THAVVKGKRT KRQRLHLAPA PAVATAPTSS TSSAEISGTT  60
TEEEEDMANC LILLAQGRSL DTVPKPESPR EEGAGPASTN GVADKFTSRS RLAEATTTTD  120
GKAGFYVYEC KTCNKCFPSF QALGGHRASH KKPKLAIPMT GNEAKKAVID EDSLQVSMNS  180
LISKSIMATT NTNSSSISNN KPRIHECSIC GSEFSSGQAL GGHMRRHRQV SIQEPSEAKK  240
QRNVLSLDLN LPAPSDDDRE EVPKSPSAMA LAFESKQPLV ISASALVDCH Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940535.10.0zinc finger protein ZAT5
TrEMBLA0A2H3X6J61e-163A0A2H3X6J6_PHODC; zinc finger protein ZAT5-like
STRINGXP_008779116.11e-164(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-52C2H2 family protein