PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010935821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 283aa MW: 30248.9 Da PI: 6.9186 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H XP_010935821.1 125 YECKTCSKCFPSFQALGGHRASH 147 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00018 | 197 | 219 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_010935821.1 197 HECSICGSEFSSGQALGGHMRRH 219 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.75E-9 | 124 | 147 | No hit | No description |
Pfam | PF13912 | 1.8E-11 | 124 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 125 | 147 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.159 | 125 | 152 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 127 | 147 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.75E-9 | 192 | 219 | No hit | No description |
Pfam | PF13912 | 8.8E-12 | 196 | 220 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.764 | 197 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 197 | 219 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 199 | 219 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MEIPEEAIIS NNNTECTHAV VKGKRTKRQK LHLPPVPAAA AAAPTSSNSS DEFSGTTTEE 60 EEDMANCLIL LAQGRALDTT PKPGSPTEEG TAGPANSNGA TEKFTSRRFA EATTTTNGKA 120 GFYVYECKTC SKCFPSFQAL GGHRASHKKP KLGIPMTGTE EKKAVIDEDS IQISMNSISK 180 SIMAASNTNS NSKPKVHECS ICGSEFSSGQ ALGGHMRRHR PLSIPENSEA KKERSVLCLD 240 LNLPAPSDDD RGEFPKSPSA VAFPFESKQP LVFSASALVD CHY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010935821.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A2H3XQY6 | 1e-165 | A0A2H3XQY6_PHODC; zinc finger protein ZAT5 | ||||
STRING | XP_008787454.1 | 1e-166 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 2e-55 | C2H2 family protein |