PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010935303.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WOX

Protein Properties

Length: 280aa MW: 31343.9 Da PI: 6.246

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010935303.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.4e-21	100	160	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++ +l +++e++V++WFqNrRa+ k+ XP_010935303.1 100 RQRWTPTPMQLQILESIFDQgNGTPSKQKIKEITLELsqhgQISETNVYNWFQNRRARSKR 160 89***************99************************************97 PP
2	Wus_type_Homeobox	103.2	1.8e-33	99	162	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq XP_010935303.1 99 ARQRWTPTPMQLQILESIFDQGNGTPSKQKIKEITLELSQHGQISETNVYNWFQNRRARSKRKQ 162 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-18	95	166	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.852	96	161	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-18	98	164	IPR009057	Homeodomain-like
SMART	SM00389	5.2E-14	98	165	IPR001356	Homeobox domain
Pfam	PF00046	6.5E-19	100	160	IPR001356	Homeobox domain
CDD	cd00086	2.64E-14	100	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEWEKTCGAN SSGQSNRGKE EERRGGGEGM AEGVLYVKVM TDEQMEVLRR QISVYATICE 60 QLVEMHKAVT AQQDSLAGMR LGSLYCDPLM TPGGHKITAR QRWTPTPMQL QILESIFDQG 120 NGTPSKQKIK EITLELSQHG QISETNVYNW FQNRRARSKR KQTAQLPNST ESEVEADDES 180 PNEKKPKSEK HTHENLPRAG ALSIHGTQMN SDVHSVDPEP NLRHGMYASN DSSRSSGSLG 240 QMSFYENALS EPRIDHLIGK MEIPGSFSPY RQSESYDLIG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	161	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010935303.1	0.0	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-114	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2H3XBN2	1e-166	A0A2H3XBN2_PHODC; WUSCHEL-related homeobox 8-like
STRING	XP_008781303.1	1e-167	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-74	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]