PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930014.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 677aa    MW: 75256.5 Da    PI: 4.8824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930014.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.9e-15481231698
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     l +p +f     +++  +  + led++g+s +vkl  + k+g+ v+++GW+eFv ++ +++g+fvvFk++g+ +f   v++f 
  XP_010930014.1  48 LFIPPTFDL---LDELINHNIYLEDSDGNSSRVKL--SVKDGSLVFQEGWREFVLDHSIEVGEFVVFKHVGELSF--SVQIFG 123
                     667777742...23334557***************..*******************************9997666..888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-1929127IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-1730127IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.06833125IPR003340B3 DNA binding domain
CDDcd100171.64E-1835122No hitNo description
SMARTSM010191.1E-1336125IPR003340B3 DNA binding domain
PfamPF023621.4E-1248122IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912580677IPR003340B3 DNA binding domain
SMARTSM010190.1584676IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-11588675IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-10589676IPR015300DNA-binding pseudobarrel domain
CDDcd100174.06E-11604676No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MGGIKHQQAC IECTKKCLKT HGKMPTPASN STPLSFFKIM VGDFREVLFI PPTFDLLDEL  60
INHNIYLEDS DGNSSRVKLS VKDGSLVFQE GWREFVLDHS IEVGEFVVFK HVGELSFSVQ  120
IFGVSACERV CFHDKNKTSL RKKNRNKTDL SPEELQLPKR CKNSDDLKDK CHFVNEDSPN  180
REPESKDDLS DLPDIEFIGS NCAEKDENES EKSPYCLGNS GGTQTEMALG FTKQSCDKID  240
EVAMRLQEEG SSAPMGGPQA HGVGHKDSMH EQETRTIPSI NELDPKAVET DANSDDAEIA  300
VLNREKIFHC DDDCRISQTA PTIECTKSMT ENQMNSSWDI IIYMPKNDCL KEPGTAEKHP  360
MRNQGVHNIG AVGLADDLKM LEHEKRNLIA KDTAACKLLL AEEGVCHICD KNLTVEHEAS  420
QITPSIPDIS ENNVSVNNNG GCCNEIVHMP REEASSKSKS ITEVSFPECT PGRIKVEKSE  480
EISEGLHGEE GLRSLAGNTP IPVSRKEDAP CAGSVRSGPQ NLPDMNITEG NTHQSGILPG  540
DFMEEDEENS APYMKGKNLK AAKAERMDSD DVDGQFSPKL ISLNFTLSSN AQSWTKLPQT  600
LPYRLGKKRH GMRVVTLQDP SMRQWPVLYH ESLKFVGFLG GWKDFAVANN LQEGNTCELF  660
EVASEWEPTF RVQISKM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147KKNRNKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930014.10.0B3 domain-containing protein Os02g0598200 isoform X1
TrEMBLA0A2H3YB150.0A0A2H3YB15_PHODC; B3 domain-containing protein Os02g0598200-like isoform X1
STRINGXP_008796055.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-11B3 family protein