PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YC

Protein Properties

Length: 175aa MW: 19867.4 Da PI: 5.9243

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010929007.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.1	3e-54	49	152	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+ fw++q ie+++dfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt rsw haeenkrrtl+k+diaaa+trtd+fdfl XP_010929007.1 49 QLQIFWADQyreIEQTSDFKNHSLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRSWAHAEENKRRTLQKNDIAAAITRTDVFDFL 143 89***99999******************************************************************************* PP NF-YC 93 vdivprdel 101 vdivprde XP_010929007.1 144 VDIVPRDEG 152 ****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.36E-33	41	143	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.5E-37	62	135	IPR009072	Histone-fold
Pfam	PF00808	1.7E-21	71	134	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MDQQGHPTPP VIGVAAPVPY PAAAAAASSG PYQAYQHLYH QQQQQQQQQL QIFWADQYRE 60 IEQTSDFKNH SLPLARIKKI MKADEDVRMI AAEAPVVFAR ACEMFILELT HRSWAHAEEN 120 KRRTLQKNDI AAAITRTDVF DFLVDIVPRD EGKEDVPRPL GAPPTDPLSY YYVPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-59	57	149	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	127	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010929007.1	1e-127	nuclear transcription factor Y subunit C-6
Refseq	XP_010929008.1	1e-127	nuclear transcription factor Y subunit C-6
Swissprot	Q9XE33	2e-65	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	A0A444ERM2	3e-95	A0A444ERM2_ENSVE; Uncharacterized protein
STRING	XP_008782988.1	8e-95	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-64	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]