 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_010924066.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
| Family |
NAC |
| Protein Properties |
Length: 392aa MW: 43082.8 Da PI: 10.0028 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010924066.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 173 | 8.7e-54 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++
XP_010924066.1 21 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPGKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTS 114
79****************************.89***************999999**************************************998 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ++vg+kk Lvfy g+ pkg kt+W+mheyrl
XP_010924066.1 115 rGAQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 148
57788***************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0045995 | Biological Process | regulation of embryonic development |
| GO:0048317 | Biological Process | seed morphogenesis |
| GO:0080060 | Biological Process | integument development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MESTDSSSGS RQQQQQQQPQ LPPGFRFHPT DEELVVHYLK KKAASAPLPV TIIAEVDLYK 60
FDPWELPGKA NFGEQEWYFF SPRDRKYPNG ARPNRAATSG YWKATGTDKP ILTSRGAQKV 120
GVKKALVFYG GKPPKGIKTN WIMHEYRLAD SSPGSSSRPP GCDAGSRRSS LRLDDWVLCR 180
IYKKNSNNNN NAQLMDRNRE DSMDDRMAPP AINTQPNPRP HHQRAPNNYT ALLDSDETFF 240
ERLLTTEDGL PTNPTSQLAG ASRPKMDLST IPTNNSTRAP KRALTSPYWS DAGMATPPPP 300
KRLQVCNNGS SPSKCTTTNN SNTRSGSNSS AANNSSSSNI NSNHGGRTIA ALLNQFPQGA 360
VYQHQTILGS LGDGSAIFQQ PYQLSGANWS SL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-75 | 6 | 187 | 2 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-75 | 6 | 187 | 2 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-75 | 6 | 187 | 2 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-75 | 6 | 187 | 2 | 168 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-75 | 6 | 187 | 2 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 5e-75 | 6 | 187 | 2 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
