PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010916230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARR-B | ||||||||
Protein Properties | Length: 764aa MW: 82770.4 Da PI: 6.1659 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.7 | 1.3e-28 | 222 | 275 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt eLH++Fv+av+qL G ++A+Pk+il+lm+v+gLt+e+v+SHLQk+Rl XP_010916230.1 222 KPRVVWTVELHQQFVNAVNQL-GVDRAVPKRILDLMNVPGLTRENVASHLQKFRL 275 79*******************.********************************8 PP | |||||||
2 | Response_reg | 72.2 | 2.1e-24 | 39 | 147 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+ + +++l+++l + +y +v+++ ++ al +l+e++ +D+++ D+ mp+mdG++ll+ i e +lp+i+++a + + + +k G XP_010916230.1 39 VLVVDDDTTCLKVLERMLLECHY-NVTTCNMATTALSILRESKggFDVVMSDVHMPDMDGFKLLELIGLEM-DLPVIMMSADMRTSIVMQGIKHG 131 89*********************.******************99***********************6644.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_010916230.1 132 ACDYLIKPVRMEELKN 147 *************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.2E-41 | 35 | 173 | No hit | No description |
SuperFamily | SSF52172 | 5.83E-35 | 36 | 179 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 6.9E-26 | 37 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.619 | 38 | 153 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.9E-22 | 39 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.83E-25 | 40 | 152 | No hit | No description |
PROSITE profile | PS51294 | 11.658 | 219 | 278 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-30 | 219 | 280 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.21E-20 | 220 | 279 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-24 | 222 | 275 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-7 | 224 | 273 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
MATVQQMPLS SMDMGSVYGG SSSKVNKPMP KDFPMGLRVL VVDDDTTCLK VLERMLLECH 60 YNVTTCNMAT TALSILRESK GGFDVVMSDV HMPDMDGFKL LELIGLEMDL PVIMMSADMR 120 TSIVMQGIKH GACDYLIKPV RMEELKNIWQ HVVRKKWKEN REAEHSDSFE DTDHNRRVID 180 DAEKTSSGTD ATDNICKSQK KRRDVKEDDE GELDNTDSSS KKPRVVWTVE LHQQFVNAVN 240 QLGVDRAVPK RILDLMNVPG LTRENVASHL QKFRLYLKRL SSAQHHTGLP ISLPDAGSNA 300 EVPSLGSLDF QTLTVSGQIP PQTLAAWQDE LFGRPAGSLG MPEMVQPVLQ QASIQGAKSV 360 PVEHGIVFGQ PLIKCQANMP KQFPQSNVAV RGLSSGFPTW SSNNLGVVSG SNLGGLSSTQ 420 NSNLLVPMLQ QQQPHPVLSE SHHAINVQPS CLVLPSQVSK RFQAREKPVL VNQNSVLVPS 480 QSSTSLQAEN NPTMNQNSIF APPKSSNSMQ AGNNLSLVSR NSSLTSSQGG NNPGLINQEP 540 MGPSQSSTSF QDGNDPGLIN QNCMVVPPRL LTSFQEGSSP APISYCSSYK NSAIVDNSLL 600 SSQSNNAQLG QAQVLDEGFK DITVLNRYLI PKSIYSSVPS CTDASAGWRA QTPDGNIGPI 660 NQSPYLVPNL KNIQGAGAVS QTLPDQGQGR NLGFPNLSNI QGGGTVSQTL PDKGQGRSLG 720 FIGQGTRIPC RFAVDDIESP TNGTSPDDDK DILNKDFFGL NGDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-24 | 218 | 281 | 1 | 64 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010916229.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_010916230.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_029119212.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_029119213.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_029119214.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
TrEMBL | A0A2H3WYF0 | 0.0 | A0A2H3WYF0_PHODC; LOW QUALITY PROTEIN: two-component response regulator ORR21 | ||||
STRING | XP_008775607.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-119 | response regulator 2 |