PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915289.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 355aa    MW: 40706.7 Da    PI: 4.9499
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915289.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.5e-35311222102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e++ed+e+++++sws   nsfvv+d+++fa+++Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+ll++
  XP_010915289.1  31 FLTKTFEMVEDPETDTVVSWSPARNSFVVWDSHRFATTLLPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLKN 116
                     9********************999*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+++
  XP_010915289.1 117 IRRRRN 122
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.4E-6227120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-3527120IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3827120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.9E-3231120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-203154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MERIVVVVKD EEEMEVPQPM PGLHEIGPPP FLTKTFEMVE DPETDTVVSW SPARNSFVVW  60
DSHRFATTLL PRYFKHNNFS SFIRQLNTYG FRKVDPDRWE FANEGFLGGQ KHLLKNIRRR  120
RNVGQSSHHD HQQQQQQQHQ VASACVEVGK FGLETEVDRL RRDRNVLMLE IVKLRQQQQS  180
SRALLLEMEQ RMQGTERKQQ QTMAFLARAL RNPSFIQRLL LRSQQMKQLS GAGRKRRLPA  240
TPSSDNLRAS EDEFAIQSEM ESLLSAVDGE VGSSSRGRKN EQMFDAMDQS SAAITDLIWE  300
ELLDESLLRG NEAAQGEQSE IEVVVEELAA EQIEWGEEVQ DLVDQIGYLG SSPEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-282912018120Heat shock factor protein 1
5d5u_B5e-282912027129Heat shock factor protein 1
5d5v_B5e-282912027129Heat shock factor protein 1
5d5v_D5e-282912027129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915288.10.0heat shock factor protein HSF30
RefseqXP_010915289.10.0heat shock factor protein HSF30
RefseqXP_019705194.10.0heat shock factor protein HSF30
SwissprotP411521e-123HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2H3XEG80.0A0A2H3XEG8_PHODC; heat shock factor protein HSF30-like
STRINGXP_008782512.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-108heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]