PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914221.1
Common NameNTF
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YC
Protein Properties Length: 221aa    MW: 24722.1 Da    PI: 6.2273
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914221.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.33.6e-56741781102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie+a+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  XP_010914221.1  74 QLQTFWATQmleIEHANDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIFDFL 168
                     89*******8888********************************************************************************** PP

           NF-YC  93 vdivprdelk 102
                     vdivprdelk
  XP_010914221.1 169 VDIVPRDELK 178
                     *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.86E-3462168IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.0E-3888160IPR009072Histone-fold
PfamPF008082.1E-2196159IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEQSTQLSQT VMEVVTCAAQ TAYAAPSYQT AAMVAGTPAV IGAISPNIQT NPHHLAYQQI  60
QQLHHQQQQQ QHQQLQTFWA TQMLEIEHAN DFKNHSLPLA RIKKIMKADE DVRMISAEAP  120
VIFAKACEMF ILELTLRSWM HTEENKRRTL QKNDIAAAIT RTDIFDFLVD IVPRDELKEE  180
GFGIARAGLP AIGGPANSMP YYYVPQQQPV TGAGGDHQEA R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-5881174295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306836.11e-165nuclear transcription factor Y subunit C-2-like
SwissprotQ655V53e-87NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A060ID371e-164A0A060ID37_ELAGV; Nuclear transcription factor Y subunit C-2
STRINGXP_008807972.11e-135(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-76nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]