PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913291.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YC
Protein Properties Length: 172aa    MW: 19599.2 Da    PI: 6.0057
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913291.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.36e-55441471101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+fileltlr w haeenkrrtl+ksdiaaa+trtd+fdfl
  XP_010913291.1  44 QLQMFWADQyreIEQTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTLRGWAHAEENKRRTLQKSDIAAAITRTDVFDFL 138
                     89*****99999*********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr+e 
  XP_010913291.1 139 VDIVPREEG 147
                     ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.58E-3237138IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.3E-3758130IPR009072Histone-fold
PfamPF008084.6E-2166129IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDQKSHGTPP AIGVATPVPY SAAVGPYQAY HHLYQQQQQQ QQQQLQMFWA DQYREIEQTT  60
DFKNHNLPLA RIKKIMKADE DVRMIAAEAP VVFARACEMF ILELTLRGWA HAEENKRRTL  120
QKSDIAAAIT RTDVFDFLVD IVPREEGKDD AIPRGLAGAP TDPLAYYYVP QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-5852144395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122RRTLQKS
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913291.11e-126nuclear transcription factor Y subunit C-6
SwissprotQ9XE335e-67NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLA0A2H3YQ921e-102A0A2H3YQ92_PHODC; nuclear transcription factor Y subunit C-6-like
STRINGXP_008802191.11e-102(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-64nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]