PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558910.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17211.5 Da    PI: 9.3763
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.88.1e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien  nrqvtfskRr+g+lKKA+EL vLCdaevavi+fs++gkl+e++s
  XP_010558910.1  9 KRIENANNRQVTFSKRRAGLLKKAHELAVLCDAEVAVIVFSNSGKLFEFAS 59
                    79***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-43160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-31275IPR002100Transcription factor, MADS-box
CDDcd002651.22E-39282No hitNo description
PRINTSPR004043.4E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGRGKIEIKR IENANNRQVT FSKRRAGLLK KAHELAVLCD AEVAVIVFSN SGKLFEFASS  60
GCLMVETMGR PVEYRRSQEG SHRGEHDPKG TFSRDVMRDS RKVCSDLGIR SNLMELMAET  120
EAESQIWEED SSARRRGRNQ SRSELFTEKA LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-22180178MEF2 CHIMERA
6byy_B1e-22180178MEF2 CHIMERA
6byy_C1e-22180178MEF2 CHIMERA
6byy_D1e-22180178MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558910.11e-108PREDICTED: agamous-like MADS-box protein AGL15
SwissprotQ392958e-32AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLR0FJ291e-31R0FJ29_9BRAS; Uncharacterized protein
STRINGXP_010558910.11e-108(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-33AGAMOUS-like 15