PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010553350.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 749aa MW: 85367.5 Da PI: 5.0496

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010553350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.1	4.6e-21	138	222	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + ++r+etrtgC a++++++ + ++w++++ +leHnH++ XP_010553350.1 138 NYYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN-----SRRKETRTGCLAMIRLRLVECNRWKLDEAKLEHNHPFD 222 69*************************************998877.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-18	138	222	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-25	346	439	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.186	629	667	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-4	642	669	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MIGDNAFSQA DQSPSTNPNL GIPIEEGSHS SEQILEDSGD DLGIESNDLE VEENELQIEA 60 NDLGLEEDEI GIRSNELDEN ECDGLLELDS NSDNRDDDES RGGGDTYTAE CESVEPQWKS 120 YPPPVAGMEF DSYDDAYNYY NSYARELGFA IRVKSSWTKR NSKEKRGAVL CCNCEGFKMV 180 KEANSRRKET RTGCLAMIRL RLVECNRWKL DEAKLEHNHP FDPERAQNSK SHKKTCCAAK 240 RKIEPSVDVE VRTIKLYRTH AGDASGHGTS NSSGDAGDRN HELADCSRRL ELRDGDFRVI 300 QDFFCQVQLT RPNFLYLMDL SDDGFLRNVF WIEPRARASY SHFGDVVAFD TTCLSNKHDI 360 PLVAFVGINH HGDSILLGCG LLSDQSFETY VWVFRAWLTC ISGRPPQTII TDQSRTVQSA 420 VSEVFPRAHH RLNLTHVLQS ISRCVVGLRD LESFHTVLNR VVYGSLKVEE FEMAWEDMIL 480 QFGLTNHEII GCLFQDREQW APVYLKDTFF AGMLTFQLGN ATLPFFFNDY VHQHMSLRGF 540 FDGYESFLAK KYKTEAILDS ESSNSIPDLK TAYPFESQLA KVFTNEIFRR FQDEILRMSS 600 CFGITQVHSN GQTSTYVVKE RDGDKVRDFE VIHDTTGSEI RSVCICGCFS FNGYLCRHAL 660 CIISHNGMEE VPSQYILKRW RKDVRRLYAA DFGCGTVDLT NPVQWQEHLQ RRAMQVVEEG 720 MKSKEHCSVA WQAFKEAVNR VRLLTDKTV

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MIGDNAFSQA DQSPSTNPNL GIPIEEGSHS SEQILEDSGD DLGIESNDLE VEENELQIEA  60
NDLGLEEDEI GIRSNELDEN ECDGLLELDS NSDNRDDDES RGGGDTYTAE CESVEPQWKS  120
YPPPVAGMEF DSYDDAYNYY NSYARELGFA IRVKSSWTKR NSKEKRGAVL CCNCEGFKMV  180
KEANSRRKET RTGCLAMIRL RLVECNRWKL DEAKLEHNHP FDPERAQNSK SHKKTCCAAK  240
RKIEPSVDVE VRTIKLYRTH AGDASGHGTS NSSGDAGDRN HELADCSRRL ELRDGDFRVI  300
QDFFCQVQLT RPNFLYLMDL SDDGFLRNVF WIEPRARASY SHFGDVVAFD TTCLSNKHDI  360
PLVAFVGINH HGDSILLGCG LLSDQSFETY VWVFRAWLTC ISGRPPQTII TDQSRTVQSA  420
VSEVFPRAHH RLNLTHVLQS ISRCVVGLRD LESFHTVLNR VVYGSLKVEE FEMAWEDMIL  480
QFGLTNHEII GCLFQDREQW APVYLKDTFF AGMLTFQLGN ATLPFFFNDY VHQHMSLRGF  540
FDGYESFLAK KYKTEAILDS ESSNSIPDLK TAYPFESQLA KVFTNEIFRR FQDEILRMSS  600
CFGITQVHSN GQTSTYVVKE RDGDKVRDFE VIHDTTGSEI RSVCICGCFS FNGYLCRHAL  660
CIISHNGMEE VPSQYILKRW RKDVRRLYAA DFGCGTVDLT NPVQWQEHLQ RRAMQVVEEG  720
MKSKEHCSVA WQAFKEAVNR VRLLTDKTV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010553350.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010553350.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A087HJU8	0.0	A0A087HJU8_ARAAL; Uncharacterized protein
STRING	XP_010553350.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]