PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010553350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | FAR1 | ||||||||
Protein Properties | Length: 749aa MW: 85367.5 Da PI: 5.0496 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.1 | 4.6e-21 | 138 | 222 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + ++r+etrtgC a++++++ + ++w++++ +leHnH++ XP_010553350.1 138 NYYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN-----SRRKETRTGCLAMIRLRLVECNRWKLDEAKLEHNHPFD 222 69***************************************998877.....8999*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-18 | 138 | 222 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.1E-25 | 346 | 439 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.186 | 629 | 667 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.4E-4 | 642 | 669 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MIGDNAFSQA DQSPSTNPNL GIPIEEGSHS SEQILEDSGD DLGIESNDLE VEENELQIEA 60 NDLGLEEDEI GIRSNELDEN ECDGLLELDS NSDNRDDDES RGGGDTYTAE CESVEPQWKS 120 YPPPVAGMEF DSYDDAYNYY NSYARELGFA IRVKSSWTKR NSKEKRGAVL CCNCEGFKMV 180 KEANSRRKET RTGCLAMIRL RLVECNRWKL DEAKLEHNHP FDPERAQNSK SHKKTCCAAK 240 RKIEPSVDVE VRTIKLYRTH AGDASGHGTS NSSGDAGDRN HELADCSRRL ELRDGDFRVI 300 QDFFCQVQLT RPNFLYLMDL SDDGFLRNVF WIEPRARASY SHFGDVVAFD TTCLSNKHDI 360 PLVAFVGINH HGDSILLGCG LLSDQSFETY VWVFRAWLTC ISGRPPQTII TDQSRTVQSA 420 VSEVFPRAHH RLNLTHVLQS ISRCVVGLRD LESFHTVLNR VVYGSLKVEE FEMAWEDMIL 480 QFGLTNHEII GCLFQDREQW APVYLKDTFF AGMLTFQLGN ATLPFFFNDY VHQHMSLRGF 540 FDGYESFLAK KYKTEAILDS ESSNSIPDLK TAYPFESQLA KVFTNEIFRR FQDEILRMSS 600 CFGITQVHSN GQTSTYVVKE RDGDKVRDFE VIHDTTGSEI RSVCICGCFS FNGYLCRHAL 660 CIISHNGMEE VPSQYILKRW RKDVRRLYAA DFGCGTVDLT NPVQWQEHLQ RRAMQVVEEG 720 MKSKEHCSVA WQAFKEAVNR VRLLTDKTV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010553350.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553350.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8 | ||||
Swissprot | Q9S793 | 0.0 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A087HJU8 | 0.0 | A0A087HJU8_ARAAL; Uncharacterized protein | ||||
STRING | XP_010553350.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14233 | 20 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 0.0 | FAR1-related sequence 8 |
Publications ? help Back to Top | |||
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