PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552949.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 356aa    MW: 38416.1 Da    PI: 6.7487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041156178123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_010552949.1 156 YQCKTCDRTFPSFQALGGHRASH 178
                     9***********99999998887 PP
2zf-C2H213.10.00028231253123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_010552949.1 231 HECGICGAEFTSGQALGGHMRRH 253
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.97E-8155178No hitNo description
PfamPF139122.0E-12155180IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471156183IPR007087Zinc finger, C2H2
SMARTSM003550.028156178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576671.97E-8226253No hitNo description
Gene3DG3DSA:3.30.160.609.4E-4229255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.2E-11230255IPR007087Zinc finger, C2H2
SMARTSM003550.047231253IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93231255IPR007087Zinc finger, C2H2
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEAPEEEKAL ILKGKRTKRQ RPQSPIPFSI SSPVPVEQES ISHDDDDHDD KNKNLNNGNE  60
EEEEKGNNVV VSSASSSSDN NAVDEEDQDM ARCLILLAQG HSLSHHLQQQ QQQQQQQLMI  120
QNNNSNNNGF RFSSRRFLET SNGNGGGGAK AGYYVYQCKT CDRTFPSFQA LGGHRASHKK  180
PKALPSVGGG ATVSLHLTNQ TTAATTSNNN NTHNGVAMYG SNKASLRHKV HECGICGAEF  240
TSGQALGGHM RRHRGAVVAA AAASAVAATA NTALSLSPFD QSDGQDYPAK KPRSAAVSLD  300
LDLNLPAPED EGRVNGLGLA SKDEPQTQQQ PQQQQKQREE QKSLVLSAPT LVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552949.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLQ84K311e-120Q84K31_ARATH; C2H2-type zinc finger family protein
STRINGXP_010552949.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-65C2H2 family protein