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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_010552947.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
| Family |
NAC |
| Protein Properties |
Length: 276aa MW: 31290.1 Da PI: 8.5747 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010552947.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.6 | 1.2e-53 | 29 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
l+pGfrFhPtdeelv++yLk+kv ++++++ ++i evdiyk+ePw+L +k+k++++ewyfFs dkky +g r nrat++gyWkatgkd+e+
XP_010552947.1 29 LAPGFRFHPTDEELVSYYLKRKVLKRPVRF-NAIGEVDIYKHEPWELAvySKLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDREIR 122
579************************999.89**************85448899999************************************* PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ +++l+g+kktLvf++grap+g +t+Wvmheyrl
XP_010552947.1 123 R-DTQLIGMKKTLVFHSGRAPDGLRTNWVMHEYRL 156
9.99*****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MGRESVALVT SPSAATPNAP ASAASATALA PGFRFHPTDE ELVSYYLKRK VLKRPVRFNA 60
IGEVDIYKHE PWELAVYSKL KTRDQEWYFF SALDKKYGNG ARMNRATNKG YWKATGKDRE 120
IRRDTQLIGM KKTLVFHSGR APDGLRTNWV MHEYRLVEYE VEKNGSMQQD AYVLCRVFHK 180
NNIGPPSGNR YAPFLEEEWD NGGNGMALIL GEDVRVMGES VPVLEDANGS NEFDQVNSCK 240
RRKPETYTIL SFGRNFSLDS RTSGDTVDEQ GSHQYQ
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 8e-50 | 25 | 182 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 8e-50 | 25 | 182 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 8e-50 | 25 | 182 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 8e-50 | 25 | 182 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 8e-50 | 25 | 182 | 13 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 8e-50 | 25 | 182 | 13 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
