PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550977.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 1040aa MW: 115901 Da PI: 9.9411

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550977.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	7e-09	44	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+ E e+++da +++G + Wk++a+ + ++R+ +++ XP_010550977.1 44 QWTKGELERFYDAYRKHGQD-WKKVAASVRNNRSVEMV 80 6***************99.*******99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.19	40	94	IPR017884	SANT domain
SuperFamily	SSF46689	5.38E-8	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	3.8E-7	44	81	IPR001005	SANT/Myb domain
CDD	cd00167	8.52E-4	45	87	No hit	No description
SMART	SM01135	7.7E-59	620	721	IPR033471	DIRP domain
Pfam	PF06584	5.5E-32	620	720	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1040 aa Download sequence Send to blast
MAPGRKSRSV NKRFSNETSP EKDVWNSSKS KQRKKKLSDK LGPQWTKGEL ERFYDAYRKH 60 GQDWKKVAAS VRNNRSVEMV EALFYMNRAY LSLPEGTASV AGLIAMMTDH YSVMDGSDSE 120 GEGHAASGVR KKYQKGKRTK ESREETNIPH SIASADGCLS FLKQAQAFGS QRRATGKRTP 180 RFPVPSSYRR EDREGSTPLS KRARKPVDND DVAHFVALAL TDASKRGGSE SPYRRTEHSD 240 SSPIKSWGKM SQAREAQSKL RDSSMCEEWV EGNRERKRKK GGSDRDATSL MDMEGVGTVE 300 VLRRGKKFYG KKAKVEEAKG IDSDDSGEAC SATEGLRSKS QKGKVDVEAS RGKFSPHGPK 360 KRNKKLQFGD EFDALQALAE LSASMLPAAL MESESSAQLK EEGTANDMDE KSSTPEATST 420 SHHGEKSKQV EPEESVLHAI SAVENTKYRK PKSSRQASAD GIAGPAGKQQ QQPSGTLRRR 480 RKPKVLDAEP PTDSNQNKST LMKESAHDEN AKSVVKTKRT VQVPAQSKQL KTVKTLEESS 540 SASDKKTLPV SASASLPQKP QNRRKMGLKK TLQERVKFSE TTPKASYVNE SLLEHELLKE 600 KLSSCLSYPL ARRRCIFEWF YSAIDYPWFA KMEFVDYLNH VGLGHVPRLT RLEWSVIKSS 660 LGRPRRFSER FLQEERDKLK QYRESVRKHY TELRAGAREG LPTDLARPLS VGNKVIAIHP 720 KTREIHDGKI LTVDHNKCSV LFDRDDLGVE FVKDIDCMPL NPLEYMPEGL RRQIDMCMAI 780 SKEAHLNRHP NFEGSVIFPS SVLENASLYM KQGDTNGPIL QAKILATNTT SPQQATNNHP 840 FITTFSKARE VEIQRALAVQ RSLNEKEIEP EMLEIVKGSK SRAQAMVDAA IKAASSVKEG 900 EDASKKIQEA IDSIGKHLPL HSSMVPGVKH QEHANGSLDH HLSQSPSDAL ESLVNGSISQ 960 DGSGKNEGQM PSELISSCVA TWLMIQMCTE RQYPPADVAQ LIDTAVMSLH PRCPQNLPIY 1020 REIQTCMGRI KTQILALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1040 aa Download sequence Send to blast

MAPGRKSRSV NKRFSNETSP EKDVWNSSKS KQRKKKLSDK LGPQWTKGEL ERFYDAYRKH  60
GQDWKKVAAS VRNNRSVEMV EALFYMNRAY LSLPEGTASV AGLIAMMTDH YSVMDGSDSE  120
GEGHAASGVR KKYQKGKRTK ESREETNIPH SIASADGCLS FLKQAQAFGS QRRATGKRTP  180
RFPVPSSYRR EDREGSTPLS KRARKPVDND DVAHFVALAL TDASKRGGSE SPYRRTEHSD  240
SSPIKSWGKM SQAREAQSKL RDSSMCEEWV EGNRERKRKK GGSDRDATSL MDMEGVGTVE  300
VLRRGKKFYG KKAKVEEAKG IDSDDSGEAC SATEGLRSKS QKGKVDVEAS RGKFSPHGPK  360
KRNKKLQFGD EFDALQALAE LSASMLPAAL MESESSAQLK EEGTANDMDE KSSTPEATST  420
SHHGEKSKQV EPEESVLHAI SAVENTKYRK PKSSRQASAD GIAGPAGKQQ QQPSGTLRRR  480
RKPKVLDAEP PTDSNQNKST LMKESAHDEN AKSVVKTKRT VQVPAQSKQL KTVKTLEESS  540
SASDKKTLPV SASASLPQKP QNRRKMGLKK TLQERVKFSE TTPKASYVNE SLLEHELLKE  600
KLSSCLSYPL ARRRCIFEWF YSAIDYPWFA KMEFVDYLNH VGLGHVPRLT RLEWSVIKSS  660
LGRPRRFSER FLQEERDKLK QYRESVRKHY TELRAGAREG LPTDLARPLS VGNKVIAIHP  720
KTREIHDGKI LTVDHNKCSV LFDRDDLGVE FVKDIDCMPL NPLEYMPEGL RRQIDMCMAI  780
SKEAHLNRHP NFEGSVIFPS SVLENASLYM KQGDTNGPIL QAKILATNTT SPQQATNNHP  840
FITTFSKARE VEIQRALAVQ RSLNEKEIEP EMLEIVKGSK SRAQAMVDAA IKAASSVKEG  900
EDASKKIQEA IDSIGKHLPL HSSMVPGVKH QEHANGSLDH HLSQSPSDAL ESLVNGSISQ  960
DGSGKNEGQM PSELISSCVA TWLMIQMCTE RQYPPADVAQ LIDTAVMSLH PRCPQNLPIY  1020
REIQTCMGRI KTQILALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	279	RKRKK
2	476	482	LRRRRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550977.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550977.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X1
Refseq	XP_019059007.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X1
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A1J3IUE4	0.0	A0A1J3IUE4_NOCCA; Protein ALWAYS EARLY 2
STRING	XP_010550977.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-144	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]