PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547082.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 378aa    MW: 42474.2 Da    PI: 7.2858
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05209228120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_010547082.1 209 FSCPVCFKTFNRYNNMQMHM 228
                     89*****************9 PP
2zf-C2H214.40.00011293315123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_010547082.1 293 FMCRKCGKAFAVRGDWRTHEKNC 315
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38209231IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64209236IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-6209228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-6278313No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5289313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549293313IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808293313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSDPYSNFFT GWFKSSPFLH YPNSNPTYPS PPPPFFFPHG SGGGGLSHRR LPSPPPSPPL  60
REALPLLSLS PANKQQYPQH DQEPSTSMDI DHDKSSSHHN YNHHHQDPHD DDHHHHHMTS  120
NLDEGDVTVA LQIGLPSPSA EEMASVLMMP SSSDSIKYDK KDLDHRCLGG GGEDDEEESG  180
GGGCRLSRLN KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE  240
SLRGTQPTGM LRLPCYCCAP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK  300
AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHVKAF GNGHGAYGGA DGFDDEDEPA  360
SEVEQLDNND HDQSMQSK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547082.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-169ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A087GYR01e-173A0A087GYR0_ARAAL; Uncharacterized protein
STRINGXP_010547082.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]