PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544786.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 387aa    MW: 41380.6 Da    PI: 8.8239
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.81e-22253315163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     ++elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN aL++e+++l+++++kl+ e+
  XP_010544786.1 253 DRELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENIALRSEINQLSDKSEKLRVEN 315
                     689********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.5E-27198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-14131227No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-18246312No hitNo description
SMARTSM003383.1E-20253317IPR004827Basic-leucine zipper domain
PfamPF001707.2E-21254315IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403255318IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.69E-11256311No hitNo description
CDDcd147024.96E-21258307No hitNo description
PROSITE patternPS000360260275IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGSNSEEPKA AKSDKSSPPP APATNVHVYP DWNAMQAYYG PRVAAIPPYY NSAVVASGHH  60
HPPPPPYMWG PQPMMSPYGA SYAALYSHGG VYAHPGVPMG SLPPGQKVPP STASGTPLSI  120
DAPTKSTGNT DNGLMKKLKE FDGLAMSIGN GHVENAEGRA EHKRSLSPET EGSFGGSDEN  180
TSGADQPKIK RSREGTPSKD ERHFSQSSPV SSVSPDRKPV TGAVLSPGAS AKSNHCPSQS  240
LAIVPSESWL QNDRELKRER RKQSNRESAR RSRLRKQAET EELARKVEAL TAENIALRSE  300
INQLSDKSEK LRVENATLVE KLKGSELGTN PERGSSNDEE NRVSGVNTEN LLSRVNSSGQ  360
GDNDPNSNGK LHQLLDTSPR ANAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269275RRSRLRK
2269276RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544786.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544786.10.0PREDICTED: G-box-binding factor 3 isoform X2
SwissprotP427761e-171GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A178VVM51e-168A0A178VVM5_ARATH; GBF3
STRINGXP_010544784.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-159G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]