PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544785.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 389aa    MW: 41623.9 Da    PI: 8.4098
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.81e-22255317163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     ++elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN aL++e+++l+++++kl+ e+
  XP_010544785.1 255 DRELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENIALRSEINQLSDKSEKLRVEN 317
                     689********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.0E-281100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-14133229No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-18248314No hitNo description
SMARTSM003383.1E-20255319IPR004827Basic-leucine zipper domain
PfamPF001707.2E-21256317IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403257320IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.69E-11258313No hitNo description
CDDcd147025.60E-21260309No hitNo description
PROSITE patternPS000360262277IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGSNSEEPKA AKSDKSSPPP APADQTNVHV YPDWNAMQAY YGPRVAAIPP YYNSAVVASG  60
HHHPPPPPYM WGPQPMMSPY GASYAALYSH GGVYAHPGVP MGSLPPGQKV PPSTASGTPL  120
SIDAPTKSTG NTDNGLMKKL KEFDGLAMSI GNGHVENAEG RAEHKRSLSP ETEGSFGGSD  180
ENTSGADQPK IKRSREGTPS KDERHFSQSS PVSSVSPDRK PVTGAVLSPG ASAKSNHCPS  240
QSLAIVPSES WLQNDRELKR ERRKQSNRES ARRSRLRKQA ETEELARKVE ALTAENIALR  300
SEINQLSDKS EKLRVENATL VEKLKGSELG TNPERGSSND EENRVSGVNT ENLLSRVNSS  360
GQGDNDPNSN GKLHQLLDTS PRANAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271277RRSRLRK
2271278RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544785.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544784.10.0PREDICTED: G-box-binding factor 3 isoform X1
RefseqXP_010544785.10.0PREDICTED: G-box-binding factor 3 isoform X1
SwissprotP427761e-171GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A178VVM51e-169A0A178VVM5_ARATH; GBF3
STRINGXP_010544784.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-160G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]