PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543577.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 391aa    MW: 42557.4 Da    PI: 6.8813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00046187209123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_010543577.1 187 YQCKTCDRTFPSFQALGGHRASH 209
                     9***********99999998887 PP
2zf-C2H2130.00031280302123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_010543577.1 280 HECGICGAEFTSGQALGGHMRRH 302
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.42E-9186209No hitNo description
PfamPF139122.3E-12186211IPR007087Zinc finger, C2H2
SMARTSM003550.028187209IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471187214IPR007087Zinc finger, C2H2
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SuperFamilySSF576672.42E-9275302No hitNo description
Gene3DG3DSA:3.30.160.603.7E-4276304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-11279304IPR007087Zinc finger, C2H2
SMARTSM003550.047280302IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93280304IPR007087Zinc finger, C2H2
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEAAAEEAMA AMTKEQSLVV KGKRTKRQRM QSPLPFSIAP APLSSHAAEE STSLLLDDDD  60
DNDDYYSKDD NNINATEDDD NKMVNGVTIT ASSASSSSNN NNNDNSAVNA EDEEDQAMAR  120
CLILLAQGHS LSNLQQQQRQ QRQLVRYHET SNNNNSNNGF RFSSRKFLET SVSNGNNGGG  180
KAGYYVYQCK TCDRTFPSFQ ALGGHRASHK KPKALHHHPD LDLKKSLHND TVSLRLNNAT  240
TTSNNKNNGN SNNQRGGAMY GTTKVSSSSN NVNNSGNKVH ECGICGAEFT SGQALGGHMR  300
RHRGAVVAAA STALSLSPMS DGQDYPAKKA RTTAVVSLDL DLNLPAPEDE NRVNGLGFAS  360
KQEHQQQQQQ QQREEQKSLV LSAPTLVDCH Y
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543577.10.0PREDICTED: zinc finger protein ZAT5-like isoform X1
RefseqXP_010543578.10.0PREDICTED: zinc finger protein ZAT5-like isoform X2
TrEMBLA0A397ZEM11e-128A0A397ZEM1_BRACM; Uncharacterized protein
STRINGXP_010543578.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-82C2H2 family protein