PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538787.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24156.7 Da    PI: 10.1514
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538787.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.61e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss
  XP_010538787.1  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSS 59
                    79***********************************************96 PP
2K-box65.71.7e-22891691797
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      + e    +++i++L+ ++R++lGe Le  s++eLqqLe+qLe+sl++iR++K++l+le+ie+l++ e++l eenk+L ++
  XP_010538787.1  89 AKGETHGFERKIQQLEISKRKMLGERLEASSVEELQQLENQLERSLTRIRARKYQLFLEEIEKLKEEERNLLEENKKLMEE 169
                     5667777899********************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.029161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-41160IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-31323IPR002100Transcription factor, MADS-box
CDDcd002653.22E-42371No hitNo description
SuperFamilySSF554554.06E-33374IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.80886176IPR002487Transcription factor, K-box
PfamPF014862.1E-2290170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGKLYEFSSS  60
SVTKTIERYQ KRTKDLVTNS KGNANSLPAK GETHGFERKI QQLEISKRKM LGERLEASSV  120
EELQQLENQL ERSLTRIRAR KYQLFLEEIE KLKEEERNLL EENKKLMEEC GMSARGGLQA  180
KQVEAAKKID DNEVVTDLSI GPPRQDSPKK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18169169MEF2C
5f28_B4e-18169169MEF2C
5f28_C4e-18169169MEF2C
5f28_D4e-18169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538787.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP4071508e-49KP407150.1 Actinidia chinensis SOC1d (SOC1d) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538787.11e-151PREDICTED: agamous-like MADS-box protein AGL14
RefseqXP_010538788.11e-151PREDICTED: agamous-like MADS-box protein AGL14
RefseqXP_010538789.11e-151PREDICTED: agamous-like MADS-box protein AGL14
SwissprotO827431e-89AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A3P5Y0M71e-92A0A3P5Y0M7_BRACM; Uncharacterized protein
STRINGXP_010538787.11e-151(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.15e-72AGAMOUS-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]