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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010526697.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | AP2 | ||||||||
Protein Properties | Length: 532aa MW: 58841 Da PI: 8.1684 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.3 | 1.2e-15 | 269 | 328 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a+ k++g XP_010526697.1 269 SQYRGVTRHRWTGRFEAHLWDnSYKkEGqsRKgRQVYLGGYDMEEKAARAYDLAAIKYWG 328 78*******************777786678446*************************98 PP | |||||||
2 | AP2 | 51 | 3.6e-16 | 371 | 422 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g XP_010526697.1 371 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDVAAIKFRG 422 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-12 | 269 | 328 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.60E-22 | 269 | 338 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-17 | 269 | 338 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-28 | 270 | 342 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.032 | 270 | 336 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-16 | 270 | 336 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 271 | 282 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.19E-26 | 371 | 432 | No hit | No description |
Pfam | PF00847 | 1.6E-11 | 371 | 422 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 371 | 431 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.5E-34 | 372 | 436 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.388 | 372 | 430 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-18 | 372 | 430 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 412 | 432 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MEENDGGVVH YHNNSQTLSY VSASSPSASA SLVPPLGDSG NNSSCYGNCH GNGEIYSHLP 60 PMPLRSDGSL CLMEAFNGSH QPNQAQKMQE LSGGVLGTHH HNSDKEAMAL SLDSMLYTTH 120 ESNNPQDSLK IFLGNPTSRE NQQYYPYNTN FPETRNHEET HGSSSSQSAH LHPQAEMKRL 180 VSGNYEDDPG ITRAGSVGIG AYGELQQALS LSMSPGSQSS FVTGSHQQLS STFLESVGLG 240 NMKRGQEAVV DQRHIVHRKS IDTFGQRTSQ YRGVTRHRWT GRFEAHLWDN SYKKEGQSRK 300 GRQVYLGGYD MEEKAARAYD LAAIKYWGPS THTNFPVDNY LKEIEETKNM TRQEYVAHLR 360 RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDVAAIKF 420 RGRNAVTNFE ITRYDVERIM SSNTLLSGDL ARKDIANKEH GSNVAADASR EGSSDRVLSF 480 PTIFAVPQMS PMRMFGPNVA GHKSPWTKPN AELKSVALAL PRVSVFASWS DS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010526697.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010526697.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 0.0 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | D7MA08 | 0.0 | D7MA08_ARALL; Uncharacterized protein | ||||
STRING | XP_010526697.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3137 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 0.0 | AP2 family protein |