 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_010525138.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
| Family |
CO-like |
| Protein Properties |
Length: 381aa MW: 42178.8 Da PI: 4.9947 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010525138.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 18.1 | 5.7e-06 | 19 | 53 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.H 37
r+C+++ + + +C+ ++ +lC +C H H
XP_010525138.1 19 RICDTCRSAACTVYCRADSAYLCTSCDARVHAAnH 53
79******99******************9995563 PP
|
| 2 | zf-B_box | 30.7 | 6.3e-10 | 61 | 106 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
++C+ +e+ ++ + C+ + lC+ C e+H+ H +vp+
XP_010525138.1 61 VWVCESCERAPAAFLCKADAASLCAACDAEIHSAnplarrHHRVPI 106
689*****************************66899999877775 PP
|
| 3 | CCT | 70.3 | 4.7e-24 | 312 | 355 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
XP_010525138.1 312 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 355
9*****************************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering |
| GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering |
| GO:0005622 | Cellular Component | intracellular |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MLKEERTSGG ETGENNWARI CDTCRSAACT VYCRADSAYL CTSCDARVHA ANHVASRHER 60
VWVCESCERA PAAFLCKADA ASLCAACDAE IHSANPLARR HHRVPILPIS GSMSGPMANH 120
HPSETAMTDT ENDMVVGREE AEDEDEDDEE AASWLLLNPG KNSGNNNNQN NGFFFDGEAD 180
EYLDLVEYNS SMENQFSDQY SQYHQDCGVP QKSFGGDGVV PLQVEESRGQ LHHEQQSFQL 240
AITYGSPGAL YGSYNGSMNH SVSMSSMDIV VVPESTASDM AVVSQLRAPK GTTDLLIGPP 300
IQMMPQLSPM DREARVLRYR EKKKTRKFEK TIRYASRKAY AETRPRIKGR FAKRTDIEAE 360
VDQAFSTTLM QESGYGIVPS F
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription factor. Does not affect flowering time. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G15840.1 | 1e-127 | B-box type zinc finger protein with CCT domain |
