PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520794.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 631aa    MW: 69610.9 Da    PI: 7.3532
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520794.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.5e-16308367155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010520794.1 308 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 367
                     78*******************988886678446*************************98 PP
2AP246.11.2e-14412461355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010520794.1 412 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 461
                     9***************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-16308377IPR016177DNA-binding domain
CDDcd000181.00E-21308375No hitNo description
PfamPF008478.5E-13308367IPR001471AP2/ERF domain
SMARTSM003805.1E-29309381IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-16309376IPR001471AP2/ERF domain
PROSITE profilePS5103219.203309375IPR001471AP2/ERF domain
PRINTSPR003671.4E-6310321IPR001471AP2/ERF domain
CDDcd000181.74E-25410471No hitNo description
SuperFamilySSF541715.95E-18410471IPR016177DNA-binding domain
PROSITE profilePS5103219.296411469IPR001471AP2/ERF domain
SMARTSM003801.4E-33411475IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-19411469IPR001471AP2/ERF domain
PfamPF008476.0E-10412461IPR001471AP2/ERF domain
PRINTSPR003671.4E-6451471IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MKIADDNSNW LGFSLSPHMT MEVAAAASGN PQHHEQHHEQ HHEHRHHHDH SDEHHQQHRR  60
SQYSDHHNTH PVPTSSASLA EHCFYSSPSS SSATPNDLNC HGICYGIVAE NGGFHAPSLS  120
VMPLKSDGSL CIMEALSRSQ PMCEGMVPSS SPKLEDFLGG ATRETMPLSL DSFYYQHNSD  180
NNTQQSSDTK HQMHYYTSGS LSCHGMFQSN VETTDINDHM LSLKNQMLFG FVDGGGRGNG  240
GDLQALTLSM SPGSQSSRCV NAPRQQISSP NEYFAVEDPK KNMITPKVTT QKQTVHRKSI  300
ETFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG RQVYLGGYDM EEKAARAYDL  360
AALKYWGPST HINFPLENYN GELEEMKGMT RQEYVAHLRR KSSGFSRGAS MYRGVTRHHQ  420
HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDVAAIKFR GANAVTNFDI SRYDVDKIMS  480
SSTLLAGENA RKSHKDLPSG NRLEPVGYAN QAPVQTGVPN SVHLENASNY QNTPPFPAAL  540
EGFVGVECGD KVGAHVSNPL SSLSNSREGT PDKSGSNLGL AFDKNVLSAK FVNSASSWFP  600
VATATQTLRS PGAATAVSMA HLPIFATWND V
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520794.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520794.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-149ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A1U8MN400.0A0A1U8MN40_GOSHI; AP2-like ethylene-responsive transcription factor ANT
STRINGXP_010520794.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31372863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-151AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]