PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109584.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 274aa    MW: 30100.4 Da    PI: 8.9481
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109584.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.94e-21109157355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp     + +r++lg+f taeeAa+a+++a+k+++g
  XP_010109584.1 109 YRGIRQRP-WGKWAAEIRDPQ----KgARVWLGTFNTAEEAARAYDQAAKRIRG 157
                     9*******.**********94....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-32108165IPR001471AP2/ERF domain
PROSITE profilePS5103223.828108165IPR001471AP2/ERF domain
SMARTSM003809.1E-37108171IPR001471AP2/ERF domain
CDDcd000186.53E-32108164No hitNo description
SuperFamilySSF541711.9E-22108165IPR016177DNA-binding domain
PfamPF008473.9E-15109157IPR001471AP2/ERF domain
PRINTSPR003675.2E-12109120IPR001471AP2/ERF domain
PRINTSPR003675.2E-12131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MCGGAIISGF VAAKRGRKLS PEELWSELDT FSDLLGLDDS YNYSKVTKTK DHTTAPQKPK  60
QSPRPAPTKG KKKLPEKNTQ AAEEEEEQEG NNNNNNSKKS GNRTRKNIYR GIRQRPWGKW  120
AAEIRDPQKG ARVWLGTFNT AEEAARAYDQ AAKRIRGDKA KLNFAPANAA DAAQQPPPPK  180
KQCVSATTAP PLSYGANYYN PFQNELAGNQ PSEMELKEQI SSLESLLGLE PEVTSSSHQL  240
SGIAGGGTGE FNQADSEGLW MLDDVVAHHR QQSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22109164662ATERF1
3gcc_A1e-22109164662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109584.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR1906030.0KR190603.1 Morus alba ethylene responsive transcription factor RAP 2.3-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109584.10.0ethylene-responsive transcription factor RAP2-3 isoform X2
TrEMBLW9S2V80.0W9S2V8_9ROSA; Ethylene-responsive transcription factor
STRINGXP_010109584.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-30ethylene-responsive element binding protein