PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010103818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 267aa MW: 30576.3 Da PI: 6.4226 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.3 | 1.5e-19 | 3 | 99 | 35 | 128 |
NAM 35 kevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmhey 126 +++ + ++ P+++ k+k + + wyfF+++ +k ++g+r+nr++k+gyW+ ++ +++g+++g k L+f++ + ++ +ktdW+mhe+ XP_010103818.1 3 ADIPLSEYTPEEIAVKYKPQVEgTWYFFTQKVRKFNKGQRRNRVAKNGYWRLANTTDVYSNNNGNKIGSKSLLAFHRVipSVKDYKKTDWIMHEF 97 567788999****96666665669***************************88776555555999***********7644677788********9 PP NAM 127 rl 128 l XP_010103818.1 98 LL 99 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.681 | 1 | 131 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-20 | 6 | 130 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-10 | 21 | 97 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MMADIPLSEY TPEEIAVKYK PQVEGTWYFF TQKVRKFNKG QRRNRVAKNG YWRLANTTDV 60 YSNNNGNKIG SKSLLAFHRV IPSVKDYKKT DWIMHEFLLP NSDQKKKSVG VGEEDMIKHD 120 DGYVLCRMYM RCCSKTNVKK ARRRSNKNAE TRILPHNVET APAASEYHAH DIDDQNAMLL 180 SMTPDHIDHE AITVVENPSS TTVSGENHDL GGLSSDTIPN AVASAAAADD DDDEFTAFLS 240 QYTFFFGDNY YYTQLMENFP STMMFWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-14 | 24 | 134 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-14 | 24 | 134 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-14 | 24 | 134 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-14 | 24 | 134 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-14 | 24 | 134 | 73 | 171 | NAC domain-containing protein 19 |
3swm_B | 4e-14 | 24 | 134 | 73 | 171 | NAC domain-containing protein 19 |
3swm_C | 4e-14 | 24 | 134 | 73 | 171 | NAC domain-containing protein 19 |
3swm_D | 4e-14 | 24 | 134 | 73 | 171 | NAC domain-containing protein 19 |
3swp_A | 4e-14 | 24 | 134 | 73 | 171 | NAC domain-containing protein 19 |
3swp_B | 4e-14 | 24 | 134 | 73 | 171 | NAC domain-containing protein 19 |
3swp_C | 4e-14 | 24 | 134 | 73 | 171 | NAC domain-containing protein 19 |
3swp_D | 4e-14 | 24 | 134 | 73 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-14 | 24 | 134 | 70 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-14 | 24 | 134 | 70 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010103818.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010103818.2 | 0.0 | NAC transcription factor 56 | ||||
TrEMBL | W9RV01 | 0.0 | W9RV01_9ROSA; NAC domain-containing protein 55 | ||||
STRING | XP_010103818.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-14 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 21406868 |