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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010102010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 27453.6 Da PI: 5.0663 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.6 | 9e-48 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF Pt+eelv++yL +k+egk+ e+++vi+ +diy +ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWkatg+ XP_010102010.1 4 LPPGFRFYPTEEELVSFYLLNKLEGKREEINRVINVIDIYGIEPWDLPKysgeLCRGDTEQWFFFTPRQEREARGGRPNRTTASGYWKATGSPGY 98 79****************************999***************645654444777*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s +++++g+kkt+vfykg+ap+g+kt+W m+eyr+ XP_010102010.1 99 VYSPDSKVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 135 ***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-50 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.798 | 4 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-25 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MQELPPGFRF YPTEEELVSF YLLNKLEGKR EEINRVINVI DIYGIEPWDL PKYSGELCRG 60 DTEQWFFFTP RQEREARGGR PNRTTASGYW KATGSPGYVY SPDSKVIGVK KTMVFYKGKA 120 PTGRKTKWKM NEYRAIEAAN PDGATTPKLR HEFSLCRVYV ISGSFRAFDR RPLEVTGDPQ 180 HQGDRAGPSA QNTTMVEKAG SSSETSSSGD LADPPGASGS NTDWEMNDDL EQTFLELDEL 240 QWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-38 | 4 | 159 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-38 | 4 | 159 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-38 | 4 | 159 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-38 | 4 | 159 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 2e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 2e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 2e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 2e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 2e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 2e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 2e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 2e-38 | 4 | 159 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 2e-38 | 4 | 159 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010102010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010102010.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 5e-85 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | W9RGY6 | 0.0 | W9RGY6_9ROSA; NAC domain-containing protein 90 | ||||
STRING | XP_010102010.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 2e-86 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Entrez Gene | 21399352 |
Publications ? help Back to Top | |||
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