PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098462.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 243aa    MW: 26702.8 Da    PI: 8.1126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098462.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19117166255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  XP_010098462.1 117 DFRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFATAEQAARAYDRAAIEFRG 166
                     79*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.36E-31116176No hitNo description
PROSITE profilePS5103224.566117174IPR001471AP2/ERF domain
PfamPF008478.4E-14117166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-32117175IPR001471AP2/ERF domain
SMARTSM003804.9E-37117180IPR001471AP2/ERF domain
PRINTSPR003673.0E-11118129IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-22118176IPR016177DNA-binding domain
PRINTSPR003673.0E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSFRSSIRVS ADEEHSIMVS ALKHVIFGGG GGGGGGAADG IAMSSSVPSA NEAVLSFFEN  60
DTCRFCLING CLGCNFFPPQ ENGGVLVKTT AGRACNGSKS SGRGSCNKRQ SQRKKKDFRG  120
VRQRPWGKWA AEIRDPRRAA RVWLGTFATA EQAARAYDRA AIEFRGAKAK LNFPMSDYKV  180
VVENGDNNGN YKKNINDQQI PDARDQELES LKSAQENDNQ IRLEDDGFWE MDGDWNWMMT  240
LDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22114175264ATERF1
3gcc_A1e-22114175264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098462.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098462.10.0ethylene-responsive transcription factor ERF109
SwissprotQ9SZ061e-33EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLW9R7J51e-180W9R7J5_9ROSA; Ethylene-responsive transcription factor
STRINGXP_010098462.11e-180(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-33redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]