PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010098340.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C3H

Protein Properties

Length: 479aa MW: 50553.4 Da PI: 8.2677

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010098340.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.9	1.4e-12	68	93	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++rtG+C yG+rC+F+H++ XP_010098340.1 68 DEADCIFYLRTGYCGYGSRCRFNHPR 93 6799********************96 PP
2	zf-CCCH	39.1	1.2e-12	115	139	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ XP_010098340.1 115 QPVCQYYMRTGTCKFGASCKYHHPR 139 689********************96 PP
3	zf-CCCH	37.1	5.2e-12	300	325	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++f+rtG Ck+G++C+++H+ XP_010098340.1 300 PGQPECQYFMRTGDCKFGSSCRYHHP 325 5789*********************9 PP
4	zf-CCCH	35.7	1.5e-11	349	372	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G+ CkF+H++ XP_010098340.1 349 PLCTHYAQQGVCKFGAACKFNHPM 372 8*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	4.7E-5	66	93	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.455	66	94	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.0E-10	68	93	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-6	69	94	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-5	72	93	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.3E-7	112	139	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.901	112	140	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-10	115	139	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-6	115	139	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-5	117	139	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.032	299	327	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.9E-6	299	326	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-9	301	325	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.5E-6	304	327	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.5E-4	305	324	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.6E-5	345	372	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.164	345	373	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.84E-6	347	375	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.7E-9	349	372	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-5	350	370	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MERYGRSTTE GSPSDPPPEW TATGAEPGLE GELHFRPTFQ FRPNFVAIRE SVWQLGLGGD 60 EPYPERPDEA DCIFYLRTGY CGYGSRCRFN HPRDRGAAMG AARAGGGEYP ERVGQPVCQY 120 YMRTGTCKFG ASCKYHHPRQ GGGSVAPVSL NYYGYPLRQL AGIQIPVQSP AAPVPPVPAP 180 VPPPALYPPM QSPSGSSSQQ YGVVVARPPL VQGSYVQGPY GPMLISPGMV PFPSWGGPYM 240 APVSPLPSPS NQHPLGSGTV YGVTQLSPSA PAYTGQYQPM PSPSGPSISS QKENPFPDRP 300 GQPECQYFMR TGDCKFGSSC RYHHPYDVTA PKTTVVLSPA GLPIRQDAPL CTHYAQQGVC 360 KFGAACKFNH PMGTLSYSPS ASSLSDMPVA PYPVGSSVGT LAPSSSSSDL RPELYVASIK 420 DTTSSARMSS TMSTSSGSVG STFSKGGSVS HSSLQQSAQN AGTSAGGNSS TSTESRTSS

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MERYGRSTTE GSPSDPPPEW TATGAEPGLE GELHFRPTFQ FRPNFVAIRE SVWQLGLGGD  60
EPYPERPDEA DCIFYLRTGY CGYGSRCRFN HPRDRGAAMG AARAGGGEYP ERVGQPVCQY  120
YMRTGTCKFG ASCKYHHPRQ GGGSVAPVSL NYYGYPLRQL AGIQIPVQSP AAPVPPVPAP  180
VPPPALYPPM QSPSGSSSQQ YGVVVARPPL VQGSYVQGPY GPMLISPGMV PFPSWGGPYM  240
APVSPLPSPS NQHPLGSGTV YGVTQLSPSA PAYTGQYQPM PSPSGPSISS QKENPFPDRP  300
GQPECQYFMR TGDCKFGSSC RYHHPYDVTA PKTTVVLSPA GLPIRQDAPL CTHYAQQGVC  360
KFGAACKFNH PMGTLSYSPS ASSLSDMPVA PYPVGSSVGT LAPSSSSSDL RPELYVASIK  420
DTTSSARMSS TMSTSSGSVG STFSKGGSVS HSSLQQSAQN AGTSAGGNSS TSTESRTSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010098340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022604.1	0.0	zinc finger CCCH domain-containing protein 34
Swissprot	Q6NPN3	1e-135	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	W9R740	0.0	W9R740_9ROSA; Zinc finger CCCH domain-containing protein 58
STRING	XP_010098340.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF983	34	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	1e-109	C3H family protein

Link Out ? help Back to Top
Entrez Gene	21406347

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]