PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010091138.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HB-other | ||||||||
Protein Properties | Length: 682aa MW: 76435.4 Da PI: 6.9588 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 38.3 | 2.3e-12 | 6 | 56 | 7 | 57 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ qle+L ++ +n+yp+ e+e+ A+ lgLt +qV+ WF +R kek+ XP_010091138.1 6 KTPRQLEALDPFYLENNYPTPVEMEDYAATLGLTYKQVRGWFVEKRRKEKR 56 5899**********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.6E-11 | 1 | 61 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-12 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.70E-12 | 5 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-12 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.8E-10 | 6 | 56 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.572 | 7 | 57 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 12.079 | 330 | 389 | IPR018501 | DDT domain |
SMART | SM00571 | 2.6E-7 | 330 | 389 | IPR018501 | DDT domain |
Pfam | PF02791 | 4.1E-7 | 333 | 386 | IPR018501 | DDT domain |
Pfam | PF15612 | 9.7E-7 | 610 | 642 | IPR028942 | WHIM1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MEIKRKTPRQ LEALDPFYLE NNYPTPVEME DYAATLGLTY KQVRGWFVEK RRKEKREGLA 60 TVPRTSSSKC KHNSKCKQML TVKNAVAKRK NKQSHLQDLF MPDYILRKVF RKDGPPLGLE 120 FDTLPSTRFF PCKGPGNSYP PCKENLRAIK RRKVSEHAVV STALNGKYPP VKKHGMGKGL 180 MTVWRITNPH AGDIPTGIDF ADEGTGASSI SKSVSRNPRI QLKKPQKQNI RNVELSEDGN 240 QELPDGQNCE LYLEGRDSQE SFHQISMLMD DEDLELGRLQ CVLDPPGCSG HSSTNAGLGC 300 SLCKDVLAKF PPNSVKMKQP FSTQPWESSV EIVKKLFKVF HFLYTYSLDV DICPFTLDEF 360 AQAFHDKDSL LLGKVNVALL KLLLSDIEEA HNNGSLPNLS RCCNYLALLH SVENQESVLE 420 FWKRSLNPLT WTEILRQVLV AAGFGSKQSA VRRESLDKEM HHMVTYGLRP GTLKGELFKI 480 LLEQGNNGLK VSDLAKSLPI VDLKIASTAE EVEYIICSVL SSDITLFEKI SSATYRLRIN 540 TIIKKAEEFQ SDTEDCGVVD DDLTGSDAYS SDEDSGCGSG SLSLQNWTIL KLRKSKEGIR 600 NVCTEIDESH SGEAWLLGLM EGEYSDLSIE EKLNAMVALT DLFRAGSSIG MEVMHRFFSF 660 FSIATNDLPH ISASMHQITL IQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 151 | RAIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010091138.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024017927.1 | 0.0 | homeobox-DDT domain protein RLT3, partial | ||||
Swissprot | F4JRF5 | 1e-164 | RLT3_ARATH; Homeobox-DDT domain protein RLT3 | ||||
TrEMBL | W9QMQ0 | 0.0 | W9QMQ0_9ROSA; Uncharacterized protein | ||||
STRING | XP_010091138.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6118 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 1e-143 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Entrez Gene | 21394607 |