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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010089926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Dof | ||||||||
Protein Properties | Length: 246aa MW: 26166.6 Da PI: 6.9314 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.6 | 2.8e-38 | 33 | 90 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 l+cprCdstntkfCyynny+l+qPr+fCk+CrryWt+GG+lr+vPvGgg+rkn k+s XP_010089926.1 33 PLPCPRCDSTNTKFCYYNNYNLAQPRHFCKSCRRYWTHGGTLRDVPVGGGSRKNSKRS 90 679***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.2E-33 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.366 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-23 | 34 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0042545 | Biological Process | cell wall modification | ||||
GO:0045787 | Biological Process | positive regulation of cell cycle | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MPSDSGDHHR RPAASDHQQQ QQEQQMGMGH PPPLPCPRCD STNTKFCYYN NYNLAQPRHF 60 CKSCRRYWTH GGTLRDVPVG GGSRKNSKRS RSSSSASAAS SSSSSSSDPL PTTYAPNIFP 120 DLPLTKPESA PDNLNPNPNP NPDLNENVTS SGHGFTSLLN SQATGILALG GYGYGLGLGH 180 NGFEEMGFGY GKGVWPFPEV GEFGGNGGSG GNTWQMNGGP EGNLVDGDCF ANWPDLSISM 240 TGKGLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00402 | DAP | Transfer from AT3G50410 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010089926.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857251 | 2e-56 | DQ857251.1 Glycine max Dof2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089926.1 | 0.0 | dof zinc finger protein DOF3.4 | ||||
Swissprot | Q39088 | 4e-44 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | W9QRV4 | 1e-180 | W9QRV4_9ROSA; Dof zinc finger protein | ||||
STRING | XP_010089926.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 5e-32 | OBF binding protein 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 21397576 |
Publications ? help Back to Top | |||
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