PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803258.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 487aa    MW: 54480.1 Da    PI: 6.754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.4e-13150172426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C ++++tGtCkyG +CkF+H+
  XP_009803258.1 150 ADCAYYMKTGTCKYGLNCKFNHP 172
                     68********************8 PP
2zf-CCCH27.26.6e-09198220527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C++++  G CkyG++Ck+ H++
  XP_009803258.1 198 ECKYYLTEGGCKYGNTCKYYHSR 220
                     7********************95 PP
3zf-CCCH40.83.6e-13241265226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C++++rtG CkyG++C+F+H+
  XP_009803258.1 241 GEKDCPYYMRTGSCKYGSNCRFHHP 265
                     7889********************9 PP
4zf-CCCH28.82.2e-09377401125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     ++++ C++f +tG Cky ++CkF+H
  XP_009803258.1 377 PGQPDCSYFIKTGDCKYRSNCKFHH 401
                     5789********************* PP
5zf-CCCH31.82.5e-10424449227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f++r+G+Ck+G+ CkF H++
  XP_009803258.1 424 DQAVCSFYSRYGICKFGPACKFGHPE 449
                     6789******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.145146174IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5146173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6148176IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10150172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5152171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826193221IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042193220IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6198220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5198221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5199220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718239267IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7239266IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10241265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-7241267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6245264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878376404IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041376403IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4378401IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5381405IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5422449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474422450IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-8424449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5424450IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MKAIESQQRI QNLNDSTLEK QDVGLDPQPL FSSDPSVQNP PQNLPDAVEN DDDDEIALQF  60
ICKELQGLVL NQAYIEERSQ GENHEENGRE KSENECGDNY YGGGDYTWSE NGYENENDVE  120
NENSDVTGSK QWGFKGNRKG LNYPLRPDAA DCAYYMKTGT CKYGLNCKFN HPSRRRNQWA  180
MEKGKQKDES EERAGQIECK YYLTEGGCKY GNTCKYYHSR RKGAISPVLN INFLGLPIRP  240
GEKDCPYYMR TGSCKYGSNC RFHHPDPSTV AGGDPSSGYN NGGSAPVKSA PYPAGSSWSS  300
PRALNETASF VPVVYPASQG IPLLSPQWNG YLAPVYPTSG KSLPTPPEFI RKDPATKTNF  360
YTRAQQPWLV EEYPERPGQP DCSYFIKTGD CKYRSNCKFH HRKNQTSKTN MSALNDKGLP  420
LRPDQAVCSF YSRYGICKFG PACKFGHPEH YDNSASSIGS VFDQPPFGNS ATSYGSRWRG  480
KETEVAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260201e-34AC226020.1 Solanum lycopersicum chromosome 6 clone C06SLm0127C05, complete sequence.
GenBankHG9754451e-34HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-34HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803258.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X2
TrEMBLA0A1U7YJG30.0A0A1U7YJG3_NICSY; zinc finger CCCH domain-containing protein 43-like isoform X2
STRINGXP_009803257.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-110C3H family protein