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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009794839.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
C3H |
| Protein Properties |
Length: 342aa MW: 38441.9 Da PI: 7.1779 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009794839.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 38.1 | 2.6e-12 | 205 | 230 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd+CkF+H+
XP_009794839.1 205 YQPDICKDYKETGYCGYGDSCKFMHD 230
67789********************7 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 2.09E-9 | 203 | 235 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.878 | 204 | 232 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-7 | 204 | 231 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.7E-10 | 205 | 230 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 205 | 235 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:3.30.40.10 | 9.7E-14 | 265 | 323 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| SuperFamily | SSF57850 | 2.53E-13 | 281 | 324 | No hit | No description |
| Pfam | PF13920 | 1.0E-8 | 281 | 323 | No hit | No description |
| CDD | cd00162 | 9.50E-9 | 282 | 323 | No hit | No description |
| PROSITE profile | PS50089 | 10.571 | 282 | 320 | IPR001841 | Zinc finger, RING-type |
| SMART | SM00184 | 1.7E-4 | 282 | 319 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 297 | 306 | IPR017907 | Zinc finger, RING-type, conserved site |
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MENSNTPAFE SNPAEAETEQ PPTAPPSSSS VCNFFKKPSK GKNIRKRPTV EEGENDDAEG 60
EGSVIYTKKK PAIADNKLRF STGASKCNKA TESNVDSKSR VFHFESSKEI QVQNDSRATA 120
TLETETEFSK DARAIRERAL KQAEGALKGK SKTGGDEKLY KGMNQYTDYK AGLRREHTIS 180
SEKAGGAHGP LRASAHIRVS ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQI 240
EKEWDEAEKE RKRKLAMGML DEDDEDAEKS DEDDDDALPF ACFICREPFV DPVMTKCKHY 300
FCEHCALKHH AKNKKCFVCN QPTLGIFNTA FEIRKRMAAQ GK
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5z56_M | 3e-68 | 31 | 337 | 14 | 317 | RING finger protein 113A |
| 5z58_M | 3e-68 | 31 | 337 | 14 | 317 | RING finger protein 113A |
| 6ff4_t | 3e-68 | 31 | 337 | 14 | 317 | RING finger protein 113A |
| 6ff7_t | 3e-68 | 31 | 337 | 14 | 317 | RING finger protein 113A |
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