PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791832.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 416aa    MW: 46448.6 Da    PI: 5.4841
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001233255123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_009791832.1 233 YECKTCNRTFPSFQALGGHRASH 255
                     99**********99999998887 PP
2zf-C2H213.60.0002317339123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_009791832.1 317 HECSYCGAEFTSGQALGGHMRRH 339
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-8232255No hitNo description
PfamPF139124.1E-13232257IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658233260IPR007087Zinc finger, C2H2
SMARTSM003550.052233255IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-8312339No hitNo description
Gene3DG3DSA:3.30.160.605.4E-4315341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0098317339IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367317344IPR007087Zinc finger, C2H2
PfamPF139122.6E-12317341IPR007087Zinc finger, C2H2
PROSITE patternPS000280319339IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDALEEVDVG CPNKDLFRIV KGKRTKRLRL SGVPCNNNNN NNNNNVEDGR DNREDIAYNN  60
NIEDDSGNGE GVVACKNNNN NIEDGRDNGK SIACKNNNNN NIEDGSGNGE GVVACKNNNN  120
NIKDDSGNGE DVAYNNNTNN NNNNYSNPFS ANSAEIFINT FTDEEEETAK SLILMSKLSD  180
DHPRPLRFTL PPDNKVDFFN DDLRLYQIKF NSKRYIETST NSANGTKAGI YVYECKTCNR  240
TFPSFQALGG HRASHKKPKT ILTTELSNKK SSYFDFSDED DYQELSPSTT TLYKNNKNVT  300
KTLPNSSNNK FSSPRIHECS YCGAEFTSGQ ALGGHMRRHR GGVNVNSPLH LSNLSPATSI  360
DQEFGNNMMK KPRDGLSLDL NIPVSDDHID PKFPVVSLNQ QDQEQTQRQQ LVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791832.10.0PREDICTED: uncharacterized protein DDB_G0283357-like
RefseqXP_016443821.10.0PREDICTED: putative uncharacterized protein DDB_G0289263
TrEMBLA0A1S3XV490.0A0A1S3XV49_TOBAC; Uncharacterized protein
TrEMBLA0A1U7XIF40.0A0A1U7XIF4_NICSY; uncharacterized protein DDB_G0283357-like
STRINGXP_009791832.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-40C2H2 family protein