PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776555.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 306aa    MW: 32937.6 Da    PI: 7.2624
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011137159123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_009776555.1 137 YECKTCNRTFPSFQALGGHRTSH 159
                     99*********999998888777 PP
2zf-C2H213.70.00018208230123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  XP_009776555.1 208 HECSICGAEFSSGQALGGHMRRH 230
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.03E-8136159No hitNo description
PfamPF139129.7E-13136161IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.72137164IPR007087Zinc finger, C2H2
SMARTSM003550.059137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-4199230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.03E-8203230No hitNo description
PROSITE profilePS501579.743208230IPR007087Zinc finger, C2H2
PfamPF139127.8E-13208232IPR007087Zinc finger, C2H2
SMARTSM003550.01208230IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEISEDSADR TLVFKGKRSK RPRQLSLVGM AVAVTSTSST GGGGAGGGTG GSSDDIGGGG  60
EFYSSSIQYS PTTSSTHIST SSEEDEDMAN CLILLAQSGR CQKLQVESSE RKMVKISSRK  120
FTEMATCTTG KAGFYVYECK TCNRTFPSFQ ALGGHRTSHK KAKTIVEEKK STADSENPDH  180
QNEEKLNEII TPTQIVNKGN SHSKPKIHEC SICGAEFSSG QALGGHMRRH RPPPMITATN  240
STKVTGETTS ESSHNDDENS NKEKPRIILS LDLNLPAPPE DDSKFGFSAN KQSLVFSPTA  300
LVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755187e-84HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776555.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1U7WQN10.0A0A1U7WQN1_NICSY; zinc finger protein ZAT5-like
STRINGXP_009776555.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-51C2H2 family protein