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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009772158.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
MYB |
Protein Properties |
Length: 357aa MW: 41045.8 Da PI: 6.7171 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009772158.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l ++++++G g+W+++++ g+ R++k+c++rw +yl
XP_009772158.1 14 KGLWSPEEDEKLSNYITKFGVGSWSSVPKLAGLQRCGKSCRLRWINYL 61
678*******************************************97 PP
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2 | Myb_DNA-binding | 47.5 | 4.1e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg ++++E+++++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
XP_009772158.1 67 RGMFSPDEEDRIISLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
788*******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MGRHSCCVKQ KLRKGLWSPE EDEKLSNYIT KFGVGSWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SPDEEDRIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLIKQG 120 IDPNTHKLLS EDQVKDEENC TNKTSMLQIP SAGLMDQPFH LTNSRSFNSE VNGQLTEASK 180 DEFVSKQVFD LLYIHEFQAN VNPNGYNSEI LAQYQQNMRP NDHRQSEFNR NPNYGFCSET 240 SITKLEHGQI TETDFASSST SRMSSSNSSN VRRYQNTAEI QMPRMLENSE DLTWEVENKI 300 ESLFQYPYIS IKNEELKSSP RQEREFYGHS SGDFMSNPLS SLTEELNGAT VNVFQQI
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975442 | 2e-41 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |