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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009629660.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
MIKC_MADS |
Protein Properties |
Length: 342aa MW: 39145 Da PI: 5.4498 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009629660.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89.1 | 2.3e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s
XP_009629660.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRISTFS 58
68***********************************************8 PP
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2 | K-box | 19.5 | 4e-08 | 102 | 172 | 1 | 71 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71
yq++s+ + +++ e+ qqe+ k k ++e + r +R + G+ e ++ e q e+ L++ lk++ ++K+
XP_009629660.1 102 YQAASSPASVDSQIEEFQQEILKYKTQLEDMDRRLRMYEGDLCEITTVCEAQYREEILQETLKQVQARKHV 172
6667777788999*******************************************************974 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRISTFSGN 60 KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKLKCETDR TYQAASSPAS VDSQIEEFQQ 120 EILKYKTQLE DMDRRLRMYE GDLCEITTVC EAQYREEILQ ETLKQVQARK HVLEETYSSP 180 QRQTAPQPQM DFASQNVNVV NNVATSDSIP NTSSNTFMDW VPRSQRDPHV QILNFLDSNG 240 LLPFRDEADQ RMENMLPPSL TQLHTPNVSA VVTDHLSPPN NRFENDPPRP TSSFEGIIDV 300 NNAPWPPLYP TGNDPFPEAQ PRERALLELF LSQLTPVNQD HL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
3mu6_A | 8e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 8e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 8e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 8e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6bz1_A | 1e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_B | 1e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_C | 1e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_D | 1e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6c9l_A | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975443 | 3e-74 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |