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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009627552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 484aa MW: 53620 Da PI: 6.6585 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.4 | 8.5e-16 | 37 | 112 | 18 | 99 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p fa+ ++ +++ led+sg++W+v + + + g+ +++GW F +++gLk gDf+vF++++++ f vv++f + XP_009627552.1 37 FPPGFARLVSHL--TNQATYLEDSSGQKWKVGI--CIHNGSLAIREGWHAFSSEHGLKMGDFLVFHYIQEQHF--VVQIFGT 112 566676555444..344689*************..88888899*************************98888..***9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.1E-11 | 29 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.63E-15 | 32 | 110 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-18 | 33 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-19 | 33 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-13 | 36 | 111 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.576 | 37 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.18 | 381 | 474 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-10 | 384 | 473 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-7 | 392 | 472 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.02E-10 | 393 | 476 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.30E-8 | 410 | 472 | No hit | No description |
PROSITE profile | PS50863 | 8.825 | 413 | 476 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MAGSGRTRRR VEAREEAALG FGRRIPFIFC VQSFQYFPPG FARLVSHLTN QATYLEDSSG 60 QKWKVGICIH NGSLAIREGW HAFSSEHGLK MGDFLVFHYI QEQHFVVQIF GTSGCQKISF 120 DNGTSTGKKR QRTNCKATSQ DELLPETDIN SRKKWNSTPS DTAVPESEMA DHEPATTTFA 180 SNIDADTGIL EIVPEAEAIS DILQGENGPG NHVSTNSISQ RESSSVDEVP VEMEFLTFKE 240 PVHFLDIGIT QTEKISEPVN DILLLGQKDE NVHNMGLISS MSSAENGGKG SHLVLPSNKE 300 SRCSNQVTRE KSNEASHIDK RERKEMAAKT HFSAKKLNGK EPNITEKDGQ GFPKAVSGNN 360 KVTKSEPADS GDASFPDAGS FSCLLRADGR NFLELPQSWP QVLTGRKKLE HITIFLQGPD 420 DRPWPVTYHE RAGSKVLASR WAEFTAVYGI KPGDECRFQL LNLSERRFTV HIAHKLDVTQ 480 ATLS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016446640.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0905400-like | ||||
TrEMBL | A0A1S3Y3C9 | 0.0 | A0A1S3Y3C9_TOBAC; B3 domain-containing protein Os01g0905400-like | ||||
STRING | XP_009627552.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2210 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 4e-11 | B3 family protein |