PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624851.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 495aa    MW: 55431.6 Da    PI: 7.8787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624851.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13306351454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N++f+ Lr+llP+      +K +Ka++L  ++eY++sL
  XP_009624851.1 306 HHMISERRRREKLNDSFQLLRSLLPPG-----TKKDKASVLASTTEYLSSL 351
                     68899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.09E-13300356No hitNo description
PROSITE profilePS5088815.529302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-17303370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-16305369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-11306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-14308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MSLGGIYNGD NDVAQRLFQE YRHSWLIMDN SRIPGLAFKN NVPYMELQFA DFQSHASNPV  60
QLQFYQEAGI KTVICMGCSI GEIEVGMTCS PQVNLEMGMT NLFAEYFSRP APAATRGITN  120
QLLPIDQNRA SSSSSFSIDS PGEYSSLLFN VASTPPYVPE PPRTDTFSDQ TIRPIPPVSA  180
TAMPYQQAIQ TLNQIQGIQL PTLETADAAL TRAYLAVMTS PSSSSSSRQS RENLPTDYNQ  240
IATQKATAFR RFRSALGPNV PIATATTRRQ NMFRRSINFF RNLNMMRSRQ EQMQPNPRAP  300
TSTQVHHMIS ERRRREKLND SFQLLRSLLP PGTKKDKASV LASTTEYLSS LKTQVEELSK  360
KNKMLEAQLL QRQNKSSFEP INQAAGEAII CSSTGGNERL DVEIRNVGES TSESRIVDLQ  420
ISVRRECSIL DLVTRLLEFL KSDNNVNLES VAANTRSVVQ SEPVTHITLR LRIEGREWDE  480
SSFEEAVKRV VDDLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310315ERRRRE
2311316RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624851.20.0PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBLA0A1J6KC120.0A0A1J6KC12_NICAT; Putative transcription factor bhlh041
STRINGXP_009624851.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-67bHLH family protein