PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009624600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 21347 Da PI: 5.8315 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1e-18 | 61 | 112 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y GVr ++ + +++AeIrd + ng r++lg+f+taeeAa a+++a+ +++g+ XP_009624600.1 61 HYIGVRKRP-WRKYAAEIRDSTRNG--IRVWLGTFDTAEEAAMAYDQAAFSMRGA 112 799******.**********44465..*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.16E-28 | 60 | 120 | No hit | No description |
PROSITE profile | PS51032 | 20.943 | 61 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 61 | 121 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-13 | 61 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-32 | 61 | 125 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 61 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-9 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-9 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence Send to blast |
MNSSSCSELS VDSDWPPLFL NTVNVEEQKM ISSEKLSLEN DFSEEIKSEK VQKLPNKEEK 60 HYIGVRKRPW RKYAAEIRDS TRNGIRVWLG TFDTAEEAAM AYDQAAFSMR GAQTCLNFPV 120 ERVQESLREF KCSSKDGSTP VEVIKEKHKK RHSKGKRKQT KEENVFVFED LGSDLLDELL 180 SECSTS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-27 | 60 | 120 | 4 | 64 | ATERF1 |
3gcc_A | 1e-27 | 60 | 120 | 4 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016464423.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 3e-49 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S3ZJN3 | 1e-112 | A0A1S3ZJN3_TOBAC; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009624600.1 | 1e-136 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23240.1 | 5e-31 | ethylene response factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|