PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009621466.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 29132.7 Da PI: 10.2041 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.3e-12 | 80 | 125 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N+ f++Lr+llP+ +K +Ka++L ++e I sL XP_009621466.1 80 HHMISERRRREKLNENFQQLRSLLPPG-----TKKDKASVLAATTENIISL 125 68899********************97.....79**********9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.20E-10 | 75 | 130 | No hit | No description |
PROSITE profile | PS50888 | 14.481 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-16 | 77 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-9 | 80 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-15 | 80 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-11 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEVENDAITR SSHNQIQENL ARDYRLATQK ATAFRRFIRS NLVPILAHKQ NMLNRSITFF 60 NNLYLMRRQE QIQVKSTQVH HMISERRRRE KLNENFQQLR SLLPPGTKKD KASVLAATTE 120 NIISLKAQVE ELSKRNEILE AQLLKKKEAS EFSSGSGKLV VQIINISEST SEARIVELQV 180 IVKGKCSKLD LVIRLLEFLK MADNVSIGSV EANTRMVQSC PVTLVTLRLR IQGDEWDESA 240 FLEAAKKVAG DMEIIG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 89 | ERRRRE |
2 | 85 | 90 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621466.1 | 0.0 | PREDICTED: putative transcription factor bHLH041 | ||||
TrEMBL | A0A1S4AVP4 | 1e-179 | A0A1S4AVP4_TOBAC; putative transcription factor bHLH041 | ||||
STRING | XP_009621466.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4567 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 1e-50 | bHLH family protein |