PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009620199.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 151aa MW: 17095.6 Da PI: 10.3433

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009620199.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.2	4.5e-18	16	56	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien+ nrqvtfsk rng++KKA+EL v+++aev +i+ + XP_009620199.1 16 KIENQNNRQVTFSKCRNGVFKKANELAVMTGAEVGIIVCPQ 56 79***********************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.5E-21	1	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.521	7	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-15	9	29	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-21	9	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.1E-20	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-15	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-15	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MSTRRIKLRK SVRLAKIENQ NNRQVTFSKC RNGVFKKANE LAVMTGAEVG IIVCPQGSKP 60 YSFGHPNVNE TINKYVGKER PPSPSGIDDN KLKKMNKNVE SQQEWFKGPI EKMNYTKASM 120 LNGGLEDLLL KVKNYGAEHG YSYENGKWKA E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620199.1	1e-109	PREDICTED: agamous-like MADS-box protein AGL62
Refseq	XP_016445672.1	1e-109	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1S3Y104	1e-108	A0A1S3Y104_TOBAC; agamous-like MADS-box protein AGL62
STRING	XP_009620199.1	1e-108	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA24056	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-22	AGAMOUS-like 61