PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009614093.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 354aa MW: 39551.5 Da PI: 8.5672

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009614093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.3	7.1e-17	23	105	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e+++Liea++ ++er +++ + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ + XP_009614093.1 23 WTVEETMVLIEAKKMDDERRMKRQgdgtsteirgnkPGELRWKWVEDYCWKMGCLRSQNQCNDKWDNLMRDFKKVREYERRVA 105 ***********977776665433455555665558899************************************99864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.166	15	91	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.9E-4	17	92	IPR009057	Homeodomain-like
Pfam	PF13837	4.1E-13	22	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MERVVANQSG GSNMLRDYRK GNWTVEETMV LIEAKKMDDE RRMKRQGDGT STEIRGNKPG 60 ELRWKWVEDY CWKMGCLRSQ NQCNDKWDNL MRDFKKVREY ERRVAEKGDD GNNNQEIIIK 120 SYWKIERSER KEKNLPTNML PEIYEALVQV VDRKCTQKLL VGGGGTSAAA AAVSLNPSTS 180 LTNSSSPTLQ QQSFQAQIAA LPLPPPPPTL SPPAVVAQQS AQPPSLPYTQ PLPAMCDSSD 240 PDRSEHSDSP AKRRRKGEGE GTSSGNNNIN NLQEVGSAIF KSAAIIAETI QASEEREERR 300 HRELLCLHER RLQIEESKAE INRQGINGLV DSINKLANSI LSLAGNKNQA APPK

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MERVVANQSG GSNMLRDYRK GNWTVEETMV LIEAKKMDDE RRMKRQGDGT STEIRGNKPG  60
ELRWKWVEDY CWKMGCLRSQ NQCNDKWDNL MRDFKKVREY ERRVAEKGDD GNNNQEIIIK  120
SYWKIERSER KEKNLPTNML PEIYEALVQV VDRKCTQKLL VGGGGTSAAA AAVSLNPSTS  180
LTNSSSPTLQ QQSFQAQIAA LPLPPPPPTL SPPAVVAQQS AQPPSLPYTQ PLPAMCDSSD  240
PDRSEHSDSP AKRRRKGEGE GTSSGNNNIN NLQEVGSAIF KSAAIIAETI QASEEREERR  300
HRELLCLHER RLQIEESKAE INRQGINGLV DSINKLANSI LSLAGNKNQA APPK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009614093.1	0.0	PREDICTED: trihelix transcription factor ASR3-like isoform X1
Refseq	XP_016501444.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
TrEMBL	A0A1S4CKL3	0.0	A0A1S4CKL3_TOBAC; trihelix transcription factor ASR3-like
STRING	XP_009614093.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4821	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	4e-57	Trihelix family protein