PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009614093.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 354aa    MW: 39551.5 Da    PI: 8.5672
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009614093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37.1e-1723105272
        trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     Wt +e+++Liea++ ++er  +++              + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ +
  XP_009614093.1  23 WTVEETMVLIEAKKMDDERRMKRQgdgtsteirgnkPGELRWKWVEDYCWKMGCLRSQNQCNDKWDNLMRDFKKVREYERRVA 105
                     *************977776665433455555665558899**************************************99864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1661591IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.9E-41792IPR009057Homeodomain-like
PfamPF138374.1E-1322102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MERVVANQSG GSNMLRDYRK GNWTVEETMV LIEAKKMDDE RRMKRQGDGT STEIRGNKPG  60
ELRWKWVEDY CWKMGCLRSQ NQCNDKWDNL MRDFKKVREY ERRVAEKGDD GNNNQEIIIK  120
SYWKIERSER KEKNLPTNML PEIYEALVQV VDRKCTQKLL VGGGGTSAAA AAVSLNPSTS  180
LTNSSSPTLQ QQSFQAQIAA LPLPPPPPTL SPPAVVAQQS AQPPSLPYTQ PLPAMCDSSD  240
PDRSEHSDSP AKRRRKGEGE GTSSGNNNIN NLQEVGSAIF KSAAIIAETI QASEEREERR  300
HRELLCLHER RLQIEESKAE INRQGINGLV DSINKLANSI LSLAGNKNQA APPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614093.10.0PREDICTED: trihelix transcription factor ASR3-like isoform X1
RefseqXP_016501444.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A1S4CKL30.0A0A1S4CKL3_TOBAC; trihelix transcription factor ASR3-like
STRINGXP_009614093.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.14e-57Trihelix family protein