PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009614004.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LFY
Protein Properties Length: 413aa    MW: 46225.1 Da    PI: 7.0522
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009614004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY647.61.7e-19713951386
         FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap.........leaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeel 86 
                     mdpeafsaslfkwdpr a+ +pp+rlle a+++++p         l+aa ++ +r+l +leelf+ayG+ry+t+akiaelGftv+tL+dmkdeel
  XP_009614004.1   1 MDPEAFSASLFKWDPRGAM-PPPTRLLEAAVAPPPPppalpppqpLSAAYSIRTRELGGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMKDEEL 94 
                     9**************9877.77778888887777666777554434444444455566************************************* PP

         FLO_LFY  87 ddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqe.ekeaagsggeglgeaelvaaee.. 178
                     dd+m+sls+ifr++llvGeryGikaa+raerrrleeee  ++r +lls+  ++aldalsqeglseepvq+ e+ea+gsgg+g +++e+vaa    
  XP_009614004.1  95 DDMMNSLSQIFRWELLVGERYGIKAAIRAERRRLEEEE-LRRRGHLLSDGGTNALDALSQEGLSEEPVQQqEREAVGSGGGG-TTWEVVAAVGgg 187
                     ************************************88.8888899999999****************99456677777776.888888776543 PP

         FLO_LFY 179 kkseeekkkaskk.kqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiake 272
                     + +++++kk  ++ +++r +  +++++e+++e +e++ + +++g + +erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iake
  XP_009614004.1 188 RMKQRRRKKVVSTgRERRGR-ASAEEDEETEEGQEDEWNINDAGGGISERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKE 281
                     44444444444442333333.333444555555555566667777778*********************************************** PP

         FLO_LFY 273 rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsi 367
                     rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdid++fnahprL+i
  XP_009614004.1 282 RGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDTIFNAHPRLAI 376
                     *********************************************************************************************** PP

         FLO_LFY 368 WYvPtkLrqLChlerskas 386
                     WYvPt+LrqLCh ers+a+
  XP_009614004.1 377 WYVPTRLRQLCHSERSNAA 395
                     ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016984.8E-2111395IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDPEAFSASL FKWDPRGAMP PPTRLLEAAV APPPPPPALP PPQPLSAAYS IRTRELGGLE  60
ELFQAYGIRY YTAAKIAELG FTVNTLLDMK DEELDDMMNS LSQIFRWELL VGERYGIKAA  120
IRAERRRLEE EELRRRGHLL SDGGTNALDA LSQEGLSEEP VQQQEREAVG SGGGGTTWEV  180
VAAVGGGRMK QRRRKKVVST GRERRGRASA EEDEETEEGQ EDEWNINDAG GGISERQREH  240
PFIVTEPGEV ARGKKNGLDY LFHLYEQCRD FLIQVQNIAK ERGEKCPTKV TNQVFRYAKK  300
AGASYINKPK MRHYVHCYAL HCLDEEASNA LRRAFKERGE NVGAWRQACY KPLVAIAARQ  360
GWDIDTIFNA HPRLAIWYVP TRLRQLCHSE RSNAAAAASS SVSGGVGDHL PHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1092344043173PROTEIN LEAFY
2vy2_A1e-1092344043173PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that act to specify determinacy in the progenitor cells for both flowers and leaves.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869280.0JQ686928.1 Nicotiana tabacum cultivar SR1 LEAFY/FLORICAULA (LFY) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614004.10.0PREDICTED: floricaula/leafy homolog 1 isoform X2
SwissprotQ405040.0FL1_TOBAC; Floricaula/leafy homolog 1
TrEMBLA0A1S4CUW90.0A0A1S4CUW9_TOBAC; floricaula/leafy homolog 1
STRINGXP_009614003.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-146floral meristem identity control protein LEAFY (LFY)